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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagtttttcaaattctctccatgcgtgcacatattaactttagatgaatgataacatctctgtgttcctgattggtagGAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAATTTTCTTATATCTATGAAGGCAGACCTAAGACAAACTCAGGTTTATTCA

Basic information

species Zea mays
transcript GRMZM2G017584_T02
intron # 2
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017584_T02 (Zea mays), 3'ss of exon 2
lower sequence: LOC_Os10g35130.1 (Oryza sativa), 3'ss of exon 2
gtagtttttcaaattct-ctccatgcgtgcacatattaactttagatgaatgataacatctctgtgttcctgattggtagGAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAATTTTCTTATATCTATGAAGGCAGACCTAAGACAAACTCAGGTTTATTCA
||| ||||    || || |    |   |     | | |  |||| || |    | || |  |||| || || |||||||||  || || ||  || ||   || |||||  || | |||||||  |||||||||||||||||||||||||| ||||||||||||||||| ||    ||||
gtaattttgactatcctgcaatctctctaggtgtgtcacatttatatcagct-tgacgttgctgtttttcttattggtagGCAAATTGCACTGCATTCGCTGATTTCAAGAGATTGTGGATGGCAAAGAAATTTTCTTATATCTATGAAGGAAGACCTAAGACAAACTCTGGCGCTTTCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211059012|gb|FL008172.1|FL008172
EST:     TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAG                         GAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAA
genomic: TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAGgtagtttttc ... tgattggtagGAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAA
EST: gi|211059010|gb|FL008170.1|FL008170
EST:     TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAG                         GAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCA
genomic: TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAGgtagtttttc ... tgattggtagGAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCA
EST: gi|149088813|gb|EE177940.2|EE177940
EST:     TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAG                         GAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAA
genomic: TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAGgtagtttttc ... tgattggtagGAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAA
EST: gi|93014337|gb|EB639857.1|EB639857
EST:     TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAG                         GAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAA
genomic: TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAGgtagtttttc ... tgattggtagGAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAA
EST: gi|30087147|gb|CB885355.1|CB885355
EST:     TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAG                         GAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAA
genomic: TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAGgtagtttttc ... tgattggtagGAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAA
EST: gi|211059013|gb|FL008173.1|FL008173
EST:     TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAG                         GAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAA
genomic: TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAGgtagtttttc ... tgattggtagGAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAA
EST: gi|211059011|gb|FL008171.1|FL008171
EST:     TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAG                         GAGAACTGTACATCACTCTTTGAATTCAAACGAGTATGGATGGGCAAGAAA
genomic: TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAGgtagtttttc ... tgattggtagGAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAA
EST: gi|50333060|gb|CO528186.1|CO528186
EST:     TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAG                         GAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAA
genomic: TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAGgtagtttttc ... tgattggtagGAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAA
EST: gi|31910413|gb|CD651411.1|CD651411
EST:     TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAG                         GAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAA
genomic: TTGATCTGTTCAAGCTGGATATTGATGAGCTGATAGCTGATTATTCCAAGgtagtttttc ... tgattggtagGAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtgcacatattaactttagatgaatgataacatctctgtgttcctgattggtagGAGAACTGTACATCACTCTTCGAATTCAAACGAGTATGGATGGGCAAGAAATTTTCTTATATCTATGAAGGCAGACCTAAGACAAACTCAGGTTTATTCA
                                       tgttcct  CT-rich tract
       atattaactttagat  TA-rich tract