1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gtatggtatataactggagttttcttgttgattacttttccttaaagaattaaagcctcatgacgtgctactgttgactgctcattgttaattatggcagGTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAATGAGACTGACATAGTGAAGAACTTTCTCTTGAAAACTCTTCACCTTCAGA
species | Zea mays |
transcript | GRMZM2G007277_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTATTGCTGCCGTAGACCATGCGTCGGAGGAAGTGCTCAACTATGATCAG GTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAATEST: gi|71447353|gb|DR828403.1|DR828403
genomic: CTATTGCTGCCGTAGACCATGCGTCGGAGGAAGTGCTCAACTATGATCAGgtatgccaat ... attatggcagGTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAAT
EST: CTATTGCTGCCGTAGACCATGCGTCGGAGGAAGTGCTCAACTATGATCAG GTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAATEST: gi|76910559|gb|DV163921.1|DV163921
genomic: CTATTGCTGCCGTAGACCATGCGTCGGAGGAAGTGCTCAACTATGATCAGgtatgccaat ... attatggcagGTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAAT
EST: CTATTGCTGCCGTAGACCATGCGTCGGAGGAAGTGCTCAACTATGATCAG GTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAATEST: gi|86465936|gb|DY232309.1|DY232309
genomic: CTATTGCTGCCGTAGACCATGCGTCGGAGGAAGTGCTCAACTATGATCAGgtatgccaat ... attatggcagGTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAAT
EST: CTATTGCTGCCGTAGACCATGCGTCGGAGGAAGTGCTCAAATATGATCAG GTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAATEST: gi|101390277|gb|EB817072.1|EB817072
genomic: CTATTGCTGCCGTAGACCATGCGTCGGAGGAAGTGCTCAACTATGATCAGgtatgccaat ... attatggcagGTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAAT
EST: CTATTGCTGCCGTAGACCATGCGTCGGAGGAAGTGCTCAACTATGATCAG GTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAATEST: gi|148991880|gb|EE033478.2|EE033478
genomic: CTATTGCTGCCGTAGACCATGCGTCGGAGGAAGTGCTCAACTATGATCAGgtatgccaat ... attatggcagGTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAAT
EST: CTATTGCTGCCGTAGACCATGCGTCGGAGGAAGTGCTCAACTATGATCAG GTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAATEST: gi|149070825|gb|EE159235.2|EE159235
genomic: CTATTGCTGCCGTAGACCATGCGTCGGAGGAAGTGCTCAACTATGATCAGgtatgccaat ... attatggcagGTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAAT
EST: CTATTGCTGCCGTAGACCATGCGTCGGAGGAAGTGCTCAACTATGATCAG GTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAAT
genomic: CTATTGCTGCCGTAGACCATGCGTCGGAGGAAGTGCTCAACTATGATCAGgtatgccaat ... attatggcagGTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAAT
agaattaaagcctcatgacgtgctactgttgactgctcattgttaattatggcagGTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAATGAGACTGACATAGTGAAGAACTTTCTCTTGAAAACTCTTCACCTTCAGA
tgttaat putative branch site (score: 75)
tcattgttaattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatggtatataactggagttttcttgttgattacttttccttaaagaattaaagcctcatgacgtgctactgttgactgctcattgttaattatggcagGTTTTTGTGAGGGATTTTGTTCCGAGTGCATTGGCTTTCCTAATGAATAATGAGACTGACATAGTGAAGAACTTTCTCTTGAAAACTCTTCACCTTCAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - -tgttgat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgactgc