1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
gtatgcaacagaacaacattaaccaaacccaacccgtgaaagctttggggagctaacaacgaatggacaaatatttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAGCCAGGAGAGATATCCGAAGTTGGTGTAGAATCAGACGGTGGAAAGGATG
species | Zea mays |
transcript | GRMZM2G117746_T01 |
intron # | 19 |
splice site | 3' |
intron type | U2 |
EST: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAG GAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAGEST: gi|60356003|gb|DN222976.1|DN222976
genomic: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAGgtatgcaaca ... tttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
EST: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAG GAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAGEST: gi|60340892|gb|DN207865.1|DN207865
genomic: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAGgtatgcaaca ... tttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
EST: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAG GAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAGEST: gi|60396895|gb|DN229714.1|DN229714
genomic: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAGgtatgcaaca ... tttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
EST: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAG GAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAGEST: gi|30032252|gb|CB834103.1|CB834103
genomic: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAGgtatgcaaca ... tttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
EST: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAG GAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAGEST: gi|60401186|gb|DN233993.1|DN233993
genomic: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAGgtatgcaaca ... tttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
EST: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAG GAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAGEST: gi|78023917|gb|DV492304.1|DV492304
genomic: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAGgtatgcaaca ... tttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
EST: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAG GAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAGEST: gi|30087265|gb|CB885473.1|CB885473
genomic: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAGgtatgcaaca ... tttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
EST: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAG GAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
genomic: CAGAACAGGACGCTACAGCTGCCCTCCTTAAACTTAAGCAGAAGGAACAGgtatgcaaca ... tttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAG
ccaacccgtgaaagctttggggagctaacaacgaatggacaaatatttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAGCCAGGAGAGATATCCGAAGTTGGTGTAGAATCAGACGGTGGAAAGGATG
agctaac putative branch site (score: 84)
acaaatatttatatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcaacagaacaacattaaccaaacccaacccgtgaaagctttggggagctaacaacgaatggacaaatatttatatcagGAAGCCGAAAAGAAGGCGAGGAAGCAGTTCAAAGGACTCTTTGACAAGAAGCCAGGAGAGATATCCGAAGTTGGTGTAGAATCAGACGGTGGAAAGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG