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...caaatatgatttaatgttatcagttatccaatttagtacaaatatatgaaccaaactgcaccttaatgtttttatcttctccccttaccctcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCCGAAGAAGTTGACAGGTGAAGAGCAGGGGAATTGCAGTGAAGTCTGGCGG
species | Zea mays |
transcript | GRMZM2G134396_T02 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT ATCTGGAAAGAAGAAATGGAACTGATACATTTTGGAAATGTTAACCTACCCEST: gi|67028452|gb|CO457201.1|CO457201
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: ACATCCACCAGACAAATGTTCCTCACATCAGGGNTGAATTTCGACACACT ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCCEST: gi|16925558|gb|BM078626.1|BM078626
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCCEST: gi|161590017|gb|EY959294.1|EY959294
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT ATCTGGAAAGAAGAAATGGAGCTGATACEST: gi|78026552|gb|DV494939.1|DV494939
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATAC
EST: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT ATCTGGAAAGAAGAAATGGAACTGATACATTTTGGAAATGTTAACCTACCCEST: gi|211360498|gb|FL383506.1|FL383506
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCCEST: gi|50336749|gb|CO531875.1|CO531875
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: ACATCCCCCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT ATTTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCCEST: gi|71299097|gb|DR785545.1|DR785545
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCCEST: gi|149090162|gb|EE179462.2|EE179462
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCCEST: gi|24769083|gb|CA404212.1|CA404212
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACCCACT ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCCEST: gi|33090962|gb|CF050956.1|CF050956
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT ATCTGGAAAGAAGGAATGGAGCTGATACATTTTGGAAATGTTAACCTACCCEST: gi|78121620|gb|DV540004.1|DV540004
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCCEST: gi|211281929|gb|FL464725.1|FL464725
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCCEST: gi|4885898|gb|AI677018.1|AI677018
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT ATCTGGAAAGAAGAAATGGAACTGATACATTTTGGAAATGTTAACCTACCCEST: gi|211424040|gb|FL301692.1|FL301692
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCCEST: gi|71772852|gb|DR970775.1|DR970775
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
EST: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACT ATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
genomic: ACATCCACCAGACAAATGTTCCTCACATCAGGGTTGAATTTCGACACACTgtatgtacct ... tcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCC
atgaaccaaactgcaccttaatgtttttatcttctccccttaccctcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCCGAAGAAGTTGACAGGTGAAGAGCAGGGGAATTGCAGTGAAGTCTGGCGG
cccttac putative branch site (score: 3)
tttttatcttctcccc CT-rich tract
ttaatgtttttatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaatatgatttaatgttatcagttatccaatttagtacaaatatatgaaccaaactgcaccttaatgtttttatcttctccccttaccctcgactgcagATCTGGAAAGAAGAAATGGAGCTGATACATTTTGGAAATGTTAACCTACCCGAAGAAGTTGACAGGTGAAGAGCAGGGGAATTGCAGTGAAGTCTGGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG