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gtatctatctctgatttgcactacatgtttccagataaggtgttagctgatcgcccccaaaaacgcagGCAAGAGAAATAGGACATGAGCTGCTGGAGACTCAGAGAACCGAGTCAATGCTTCAGATTAAG
species | Zea mays |
transcript | GRMZM2G092232_T02 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AGCTGAAGCTGAAGGAACAGGAACACCAGCGATCAGTTGCGGAACTAAAG GCAAGAGAAATAGGACATGAGCTGCTGGAGACTCAGAGAACCGAGTCAATGEST: gi|211049052|gb|FL196692.1|FL196692
genomic: AGCTGAAGCTGAAGGAACAGGAACACCAGCGATCAGTTGCGGAACTAAAGgtatctatct ... aaaaacgcagGCAAGAGAAATAGGACATGAGCTGCTGGAGACTCAGAGAACCGAGTCAATG
EST: AGCTGAAGCTGAAGGAACAGGAACACCAGCGATCAGTTGCGGAACTAAAG GCAAGAGAAATAGGACATGAGCTGCTGGAGACTCATAGAACCGAGTCAATGEST: gi|60346115|gb|DN213088.1|DN213088
genomic: AGCTGAAGCTGAAGGAACAGGAACACCAGCGATCAGTTGCGGAACTAAAGgtatctatct ... aaaaacgcagGCAAGAGAAATAGGACATGAGCTGCTGGAGACTCAGAGAACCGAGTCAATG
EST: AGCTGAAGCTGAAGGAACAGGAACACCAGCGATCAGTTGCGGAACTAAAG GCAAGAGAAATAGGACATGAGCTGCTGGAGACTCAGAGAACCGAGTCAATGEST: gi|87156374|gb|DY401163.1|DY401163
genomic: AGCTGAAGCTGAAGGAACAGGAACACCAGCGATCAGTTGCGGAACTAAAGgtatctatct ... aaaaacgcagGCAAGAGAAATAGGACATGAGCTGCTGGAGACTCAGAGAACCGAGTCAATG
EST: AGCTGAAGCTGAAGGAACAGGAACACCAGCGATCAGTTGCGGAACTAAAG GCAAGAGAAATAGGACATGAGCTGCTGGAGACTCAGAGAACCGAGTCAATGEST: gi|211049053|gb|FL196693.1|FL196693
genomic: AGCTGAAGCTGAAGGAACAGGAACACCAGCGATCAGTTGCGGAACTAAAGgtatctatct ... aaaaacgcagGCAAGAGAAATAGGACATGAGCTGCTGGAGACTCAGAGAACCGAGTCAATG
EST: AGCTGAAGCTGAAGGAACAGGAACACCAGCGATCAGTTGCGGAACTAAAG GCAAGAGAAATAGGACATGAGCTGCTGGAGACTCAGAGAACCGAGTCAATG
genomic: AGCTGAAGCTGAAGGAACAGGAACACCAGCGATCAGTTGCGGAACTAAAGgtatctatct ... aaaaacgcagGCAAGAGAAATAGGACATGAGCTGCTGGAGACTCAGAGAACCGAGTCAATG
atttgcactacatgtttccagataaggtgttagctgatcgcccccaaaaacgcagGCAAGAGAAATAGGACATGAGCTGCTGGAGACTCAGAGAACCGAGTCAATGCTTCAGATTAAG
agctgat putative branch site (score: 3)
aaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatctatctctgatttgcactacatgtttccagataaggtgttagctgatcgcccccaaaaacgcagGCAAGAGAAATAGGACATGAGCTGCTGGAGACTCAGAGAACCGAGTCAATGCTTCAGATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA