1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtcagttcacttcagcgtcatgccatgtgatggtggttattccttctggttcgaagacgcggatgttcttaacttttttttttttacattcacccggaaatttgttgcagCAAGGCGAAGGCCACCGTGGGTGCACAGCAATGGAAGAACGCGGAGGATTCTCTGTTCAGCCTCGGCAAAGGAAACGTGGAGTCAGTGGATTCTATAGTC
species | Zea mays |
transcript | GRMZM2G024576_T01 |
intron # | 18 |
splice site | 3' |
intron type | U2 |
EST: AAAGCAGTCGACAGCGGAAGGTCTTGCCTGGCCGAAGTGCTTGTAGAATG CAAGGCGAAGGCCACCGTGGGTGCACAGCAATGGAAGAACGCGGAGGATTCEST: gi|148945804|gb|EC891090.2|EC891090
genomic: AAAGCAGTCGACAGCGGAAGGTCTTGCCTGGCCGAAGTGCTTGTAGAATGgtcagttcac ... tttgttgcagCAAGGCGAAGGCCACCGTGGGTGCACAGCAATGGAAGAACGCGGAGGATTC
EST: AAAGCAGTCGACAGCGGAAGGTCTTGCCTGGCCGAAGTGCTTGTAGAATG CAAGGCGAAGGCCACCGTGGGTGCACAGCAATGGAAGAACGCGGAGGATTCEST: gi|26457141|gb|CA828724.1|CA828724
genomic: AAAGCAGTCGACAGCGGAAGGTCTTGCCTGGCCGAAGTGCTTGTAGAATGgtcagttcac ... tttgttgcagCAAGGCGAAGGCCACCGTGGGTGCACAGCAATGGAAGAACGCGGAGGATTC
EST: AAAGCAGTCGACAGCGGAAGGTCTTGCCTGGCCGAAGTGCTTGTAGAATG CAAGGCGAAGGCCACCGTGGGTGCACAGCAATGGAAGAACGCGGAGGATTCEST: gi|20811178|gb|BQ295656.1|BQ295656
genomic: AAAGCAGTCGACAGCGGAAGGTCTTGCCTGGCCGAAGTGCTTGTAGAATGgtcagttcac ... tttgttgcagCAAGGCGAAGGCCACCGTGGGTGCACAGCAATGGAAGAACGCGGAGGATTC
EST: AAAGCAGTCGACAGCGGAAGGTCTTGCCTGGCCGAAGTGCTTGTAGAATG CAAGGCGAAGGCCACCGTGGGTGCACAGCAATGGAAGAACGCGGAGGATTCEST: gi|101382782|gb|EB813446.1|EB813446
genomic: AAAGCAGTCGACAGCGGAAGGTCTTGCCTGGCCGAAGTGCTTGTAGAATGgtcagttcac ... tttgttgcagCAAGGCGAAGGCCACCGTGGGTGCACAGCAATGGAAGAACGCGGAGGATTC
EST: AAAGCAGTCGACAGCGGAAGGTCTTGCCTGGCCGAAGTGCTTGTAGAATG CAAGGCGAAAGCCACCGTGGGTGCACAGCAATGGAAGAACGCGGAGGATTCEST: gi|101382780|gb|EB813445.1|EB813445
genomic: AAAGCAGTCGACAGCGGAAGGTCTTGCCTGGCCGAAGTGCTTGTAGAATGgtcagttcac ... tttgttgcagCAAGGCGAAGGCCACCGTGGGTGCACAGCAATGGAAGAACGCGGAGGATTC
EST: AAAGCAGTCGACAGCGGAAGGTCTTGCCTGGCCGAAGTGCTTGTAGAATG CAAGGCGAAGGCCACCGTGGGTGCACAGCAATGGAAGAACGCGGAGGATTC
genomic: AAAGCAGTCGACAGCGGAAGGTCTTGCCTGGCCGAAGTGCTTGTAGAATGgtcagttcac ... tttgttgcagCAAGGCGAAGGCCACCGTGGGTGCACAGCAATGGAAGAACGCGGAGGATTC
gacgcggatgttcttaacttttttttttttacattcacccggaaatttgttgcagCAAGGCGAAGGCCACCGTGGGTGCACAGCAATGGAAGAACGCGGAGGATTCTCTGTTCAGCCTCGGCAAAGGAAACGTGGAGTCAGTGGATTCTATAGTC
tcttaac putative branch site (score: 148)
atgttcttaacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttcacttcagcgtcatgccatgtgatggtggttattccttctggttcgaagacgcggatgttcttaacttttttttttttacattcacccggaaatttgttgcagCAAGGCGAAGGCCACCGTGGGTGCACAGCAATGGAAGAACGCGGAGGATTCTCTGTTCAGCCTCGGCAAAGGAAACGTGGAGTCAGTGGATTCTATAGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA