Sequence
atgc intronic sequence ATGC exonic sequencegtatgattagtccaaaagtgcatattggatgtgttatcatatttcatattacaatcatgaccaaattcctgttctgcagTCTGGTCATAACATTGAAAAAGTCAGGGAAAAAATGGGGGATCTGATAAAGCAAATGGTCAACATTTATTCTCTTCCCAAATTACTTCCCTATATTCTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G009849_T01 (Zea mays), 3'ss of exon 18
lower sequence: LOC_Os01g60040.2 (Oryza sativa), 3'ss of exon 36
-------------------------------------------------------------------------------------------gtatgattagtccaaaagtgcatattggatgtgt---tatcatatttcatattacaatcatgaccaaat---tcctgttctgcagTCTGGTCATAACATTGAAAAAGTCAGGGAAAAAATGGGGGATCTGATAAAGCAAATGGTCAACATTTATTCTCTTCCCAAATTACTTCCCTATATTCTTG
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gtacatagagtgcacaaatattgattagtgtaatcctgaatcttcccatcagaaacacaggctggagaagtatattcttcagattgatcgaacatatttatttgttatatgccattgcaatctttgcctataattttaaattttcgattcattcctaaacaactgctgtattgcagTCTGGCCACAACATCGAAAAAGTCAGAGAAAAAATGGGAGAGCTGATAAAGCAAATGGTCAACATCTATTCTCTTCCAAAACTTCTCCCATACATTTTGG
upper sequence: GRMZM2G009849_T01 (Zea mays), 3'ss of exon 18
lower sequence: AT2G35630.1 (Arabidopsis thaliana), 3'ss of exon 37
------------------------------------------------gtatgatta--gtccaaaagtgcatattggatgtgttatcatatttcatattacaatcatgaccaaattcctgttct----gcagTCTGGTCATAACATTGAAAAAGTCAGGGAAAAAATGGGGGATCTGATAAAGCAAATGGTCAACATTTATTCTCTTCCCAAATTACTTCCCTATATTCTTG
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gttaggcatctgatattaatccaatttcctatggtgttggcctctttctaatcattcccgtttatctttctgttttagaaaaagattggtgcttcag--tgtctttatatttaactccttgtccttggtgcagTTGGGGCATAACATTGAAAAAGTAAGAGAAAAAATGCGGGAGCTGATGAAGCAGATCATTCAGGCATATTCTGTAGGAAAGACGTATCCCTATATTTTGG
upper sequence: GRMZM2G009849_T01 (Zea mays), 3'ss of exon 18
lower sequence: EFJ11209 (Selaginella moellendorffii), 3'ss of exon 35
gtatgattagtccaaaagtgcatattggatgtgttatcatatttcata-ttacaatcatgaccaaattcctgttctgcagTCTGGTCATAACATTGAAAAAGTCAGGGAAAAAATGGGGGATCTGATAAAGCAAATGGTCAACATTTATTCTCTTCCCAAATTACTTCCCTATATTCTTG
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--------------------------------gtaattgacatttatgcttgcgagtttagctgagcatgtttcctgcagTCTGGTCATAATATTGAAAAGGTTCGGGAAAAGATGCGGGAGCTGATGAGACTCATCTGTTGCATCTACCCTGCATCAAAGCTATTTACGTACATTTGCGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|28909669|gb|CB331043.1|CB331043EST: TGTTGACAGAAGCTGAAGCTGCAATTTTTCTTCCTTGCCTCATAGAGAAG TCTGG-CATAAC-TTGAAAAAGTCAGGGAAAAAATGGGGGATCTGATAAAG
genomic: TGTTGACAGAAGCTGAAGCTGCAATTTTTCTTCCTTGCCTCATAGAGAAGgtatgattag ... tgttctgcagTCTGGTCATAACATTGAAAAAGTCAGGGAAAAAATGGGGGATCTGATAAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttggatgtgttatcatatttcatattacaatcatgaccaaattcctgttctgcagTCTGGTCATAACATTGAAAAAGTCAGGGAAAAAATGGGGGATCTGATAAAGCAAATGGTCAACATTTATTCTCTTCCCAAATTACTTCCCTATATTCTTG
ttcctgttct CT-rich tract
ttatcatatttcatat TA-rich tract