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...tccttttgtttgcttggtgaaggtttttttgttgtttgaaagcaaagttatgtggtgctaatgctaaattagcaacttatttcattcactctttgagcagGTGCTGGACGCAAATCCCGTGCATGTGAAAGCTCTTTACCGCCGAGGAACGTCCTTCATGTTACTTGGGGACTTCAACGATGCAAGGAATGATTTTGAGA
species | Zea mays |
transcript | GRMZM2G117746_T01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: GCTACCAGAAGATGGGCGAATACAGAAAATCCATTGAAACATGCAATAAG GTGCTGGACGCAAATCCCGTGCATGTGAAAGCTCTTTACCGCCGAGGAACGEST: gi|60356003|gb|DN222976.1|DN222976
genomic: GCTACCAGAAGATGGGCGAATACAGAAAATCCATTGAAACATGCAATAAGgtaaggtttc ... ctttgagcagGTGCTGGACGCAAATCCCGTGCATGTGAAAGCTCTTTACCGCCGAGGAACG
EST: GCTACCAGAAGATGGGCGAATACAGAAAATCCATTGAAACATGCAATAAG GTGCTGGACGCAAATCCCGTGCATGTGAAAGCTCTTTACCGCCGAGGAACGEST: gi|60340892|gb|DN207865.1|DN207865
genomic: GCTACCAGAAGATGGGCGAATACAGAAAATCCATTGAAACATGCAATAAGgtaaggtttc ... ctttgagcagGTGCTGGACGCAAATCCCGTGCATGTGAAAGCTCTTTACCGCCGAGGAACG
EST: AATACAGAAAATCCATTGAAACATGCAATAAG GTGCTGGACGCAAATCCCGTGCATGTGAAAGCTCTTTACCGCCGAGGAACGEST: gi|60396895|gb|DN229714.1|DN229714
genomic: AATACAGAAAATCCATTGAAACATGCAATAAGgtaaggtttc ... ctttgagcagGTGCTGGACGCAAATCCCGTGCATGTGAAAGCTCTTTACCGCCGAGGAACG
EST: CAGAAAATCCATTGAAACATGCAATAAG GTGCTGGACGCAAATCCCGTGCATGTGAAAGCTCTTTACCGCCGAGGAACGEST: gi|60401186|gb|DN233993.1|DN233993
genomic: CAGAAAATCCATTGAAACATGCAATAAGgtaaggtttc ... ctttgagcagGTGCTGGACGCAAATCCCGTGCATGTGAAAGCTCTTTACCGCCGAGGAACG
EST: ATACAGAAAATCCATTGAAACATGCAATAAG GTGCTGGACGCAAATCCCGTGCATGTGAAAGCTCTTTACCGCCGAGGAACGEST: gi|30087265|gb|CB885473.1|CB885473
genomic: ATACAGAAAATCCATTGAAACATGCAATAAGgtaaggtttc ... ctttgagcagGTGCTGGACGCAAATCCCGTGCATGTGAAAGCTCTTTACCGCCGAGGAACG
EST: GCTACCAGAAGATGGGCGAATACAGAAAATCCATTGAAACATGCAATAAG GTGCTGGACGCAAATCCCGTGCATGTGAAAGCTCTTTACCGCCGAGGAACG
genomic: GCTACCAGAAGATGGGCGAATACAGAAAATCCATTGAAACATGCAATAAGgtaaggtttc ... ctttgagcagGTGCTGGACGCAAATCCCGTGCATGTGAAAGCTCTTTACCGCCGAGGAACG
agttatgtggtgctaatgctaaattagcaacttatttcattcactctttgagcagGTGCTGGACGCAAATCCCGTGCATGTGAAAGCTCTTTACCGCCGAGGAACGTCCTTCATGTTACTTGGGGACTTCAACGATGCAAGGAATGATTTTGAGA
tgctaaa putative branch site (score: 103)
tttcattcactcttt putative PPT
ttatttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tccttttgtttgcttggtgaaggtttttttgttgtttgaaagcaaagttatgtggtgctaatgctaaattagcaacttatttcattcactctttgagcagGTGCTGGACGCAAATCCCGTGCATGTGAAAGCTCTTTACCGCCGAGGAACGTCCTTCATGTTACTTGGGGACTTCAACGATGCAAGGAATGATTTTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - tgtttgc
- - - - - - - - - - - - - - -tgttgtt
- - - - - - - - - - - - - - - - - - - -aagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - -gtggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgctaa