1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
gtgagatttaactactttgtttcatttaaccttcgttgagtcttatagaacagtacctcatccaacaattatcttgcaatttatcttttgttagttatattagtgttgaggacttgaggtcattgttcttcttattattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTATTCCAGGGAATAACAACAGTTATGACAAATGTCGTCGAAGATTTGACCT
species | Zea mays |
transcript | GRMZM2G032628_T01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: TAATCTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|31354152|gb|CD438509.1|CD438509
genomic: TAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|67017922|gb|CO446671.1|CO446671
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGTAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|24765722|gb|CA400881.1|CA400881
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: ATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|24764942|gb|CA400103.1|CA400103
genomic: ATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|24764657|gb|CA399821.1|CA399821
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: CATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTCCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|67015582|gb|CO444331.1|CO444331
genomic: CATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: GTTTGGACATCCTG -ATGGATANA-TTTCCAAGA-GTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|67032289|gb|CO461038.1|CO461038
genomic: GTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: GGCTATCNTT-ATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|32838528|gb|CD978206.1|CD978206
genomic: GGCTATC-TTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|67042631|gb|CO468886.1|CO468886
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|24763965|gb|CA399135.1|CA399135
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: TGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|31360518|gb|CD444875.1|CD444875
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: GGAGGAGAGGGCTATCTTA-TTTCATGGGAAAATGAGTT-G-ACATCCTG AATG-ATAGATTTTCEST: gi|67022063|gb|CO450812.1|CO450812
genomic: GGAGGAGAGGGCTATCTTAATTTCATGGGAAA-TGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTC
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|32838173|gb|CD977851.1|CD977851
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|31358648|gb|CD443005.1|CD443005
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|31361510|gb|CD445867.1|CD445867
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|67026391|gb|CO455140.1|CO455140
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|24764776|gb|CA399938.1|CA399938
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|24763853|gb|CA399024.1|CA399024
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|67023243|gb|CO451992.1|CO451992
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|31351548|gb|CD435905.1|CD435905
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATCATTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|32934900|gb|CF039712.1|CF039712
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|67018661|gb|CO447410.1|CO447410
genomic: AGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTGTAEST: gi|31350231|gb|CD434588.1|CD434588
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGACATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|31357480|gb|CD441837.1|CD441837
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|67043028|gb|CO469283.1|CO469283
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|67011365|gb|CO440114.1|CO440114
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|5343127|gb|AI795537.1|AI795537
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|24765115|gb|CA400276.1|CA400276
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|24767830|gb|CA402966.1|CA402966
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|67018905|gb|CO447654.1|CO447654
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAG-AGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTNTCCAAGAAGTCCGCAAAGACTTNCA-GTGGTAAGTTTAEST: gi|31349259|gb|CD433616.1|CD433616
genomic: -GGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: TAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|31352581|gb|CD436938.1|CD436938
genomic: TAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGCGATGGAAATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|31362258|gb|CD446615.1|CD446615
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTAEST: gi|31355884|gb|CD440241.1|CD440241
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
EST: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTG AATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
genomic: AGGAGGAGAGGGCTATCTTAATTTCATGGGAAATGAGTTTGGACATCCTGgtgagattta ... tattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTA
ttagttatattagtgttgaggacttgaggtcattgttcttcttattattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTATTCCAGGGAATAACAACAGTTATGACAAATGTCGTCGAAGATTTGACCT
ttcttcttattatttt CT-rich tract
ttcttcttattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatttaactactttgtttcatttaaccttcgttgagtcttatagaacagtacctcatccaacaattatcttgcaatttatcttttgttagttatattagtgttgaggacttgaggtcattgttcttcttattattttgcagAATGGATAGATTTTCCAAGAGGTCCGCAAAGACTTCCAAGTGGTAAGTTTATTCCAGGGAATAACAACAGTTATGACAAATGTCGTCGAAGATTTGACCT
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