1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...ttatacgcaatctctactttctgttgggttctgcgaggtattgttaaactcatcctgccctggttcatcgcaccctgaaactgaaaaatattttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
species | Zea mays |
transcript | GRMZM2G021864_T01 |
intron # | 17 |
splice site | 3' |
intron type | U2 |
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACGACTGAAGCAGACGEST: gi|211215778|gb|FL437224.1|FL437224
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|32804257|gb|CD956493.1|CD956493
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|78022987|gb|DV491374.1|DV491374
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|32909144|gb|CF013956.1|CF013956
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGGCAACGAGATACCCAACTGAAGCAGACGEST: gi|32931903|gb|CF036715.1|CF036715
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|211458170|gb|FL127582.1|FL127582
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|89248917|gb|DY620703.1|DY620703
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGGTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|89758497|gb|DY687658.1|DY687658
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTTCAGG GCGTGA-GAGCTTCGACAACGAGATACACAACTGAGGCAGACGEST: gi|5608024|gb|AI901691.1|AI901691
genomic: CTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTT-CAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|6194461|gb|AW146565.1|AW146565
genomic: CTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|211460681|gb|FL127583.1|FL127583
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGATTGGAGAEST: gi|32934210|gb|CF039022.1|CF039022
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGATTGGAGA
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|78106767|gb|DV525185.1|DV525185
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|116827696|gb|EC871624.1|EC871624
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAG-AAACATCGCTCTGTTTTCAA- GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|32930527|gb|CF035339.1|CF035339
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACACCGAGATACCCAACTGAAGCAGACGEST: gi|5915604|gb|AW053245.1|AW053245
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|32932800|gb|CF037612.1|CF037612
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|5713643|gb|AI943635.1|AI943635
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|5361116|gb|AI795731.1|AI795731
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGEST: gi|32932808|gb|CF037620.1|CF037620
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|91054831|gb|EB165249.1|EB165249
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|13381810|gb|BG458485.1|BG458485
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGEST: gi|12968788|gb|BG265825.1|BG265825
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
EST: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAG GCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
genomic: CCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCTCTGTTTTCAAGgtaaaattgc ... ttttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
aaactcatcctgccctggttcatcgcaccctgaaactgaaaaatattttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
tatttttt CT-rich tract
tgaaactgaaaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatacgcaatctctactttctgttgggttctgcgaggtattgttaaactcatcctgccctggttcatcgcaccctgaaactgaaaaatattttttacagGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - ctgttgg
- - - - - - - - - - - - - -gttctgc
- - - - - - - - - - - - - - - - - - - - - - -aaactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata