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...ttgtcttatgacctaaatttgttactgtgaactaccgctctctgctttttttaatgctggtgttaacaaggttgccctcactcactttcacattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAGGAAGAGGCACCGGCTCCAGCAATGGGTGGCATGGGTGGAATGGATTAC
species | Zea mays |
transcript | GRMZM2G416120_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: ATCATTGATCCGCTAAAGGTCATCAGANCTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAEST: gi|149073907|gb|EE162235.2|EE162235
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTGGAGATCCCCAAEST: gi|19770412|gb|BQ035133.1|BQ035133
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAEST: gi|32914117|gb|CF018929.1|CF018929
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAEST: gi|91875568|gb|EB405525.1|EB405525
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAEST: gi|60337000|gb|DN203973.1|DN203973
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAEST: gi|60353910|gb|DN220883.1|DN220883
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAEST: gi|24764192|gb|CA399359.1|CA399359
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAEST: gi|14997318|gb|BI319298.1|BI319298
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAEST: gi|67023389|gb|CO452138.1|CO452138
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAEST: gi|60347399|gb|DN214372.1|DN214372
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAEST: gi|149077208|gb|EE165874.2|EE165874
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAEST: gi|32858330|gb|CD998011.1|CD998011
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAEST: gi|37374359|gb|CF623530.1|CF623530
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAEST: gi|60397601|gb|DN230417.1|DN230417
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAEST: gi|4874396|gb|AI673916.1|AI673916
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCCCGGAATCCATAATTGTAGAGATCCCCAAEST: gi|30088021|gb|CB886226.1|CB886226
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGANNNNNNNGGAATCCATAATTGTAGAGATCCCCAAEST: gi|45847330|gb|CN071273.1|CN071273
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAEST: gi|21432198|gb|BQ547688.1|BQ547688
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAAEST: gi|28982390|gb|BQ538103.2|BQ538103
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAEST: gi|30088022|gb|CB886227.1|CB886227
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
EST: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAG TGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
genomic: ATCATTGATCCGCTAAAGGTCATCAGAACTGCATTGGTGGATGCTGCTAGgtaaactgac ... cattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAA
tttttttaatgctggtgttaacaaggttgccctcactcactttcacattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAGGAAGAGGCACCGGCTCCAGCAATGGGTGGCATGGGTGGAATGGATTAC
cactcac putative branch site (score: 86)
ctttcac CT-rich tract
ttaacaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgtcttatgacctaaatttgttactgtgaactaccgctctctgctttttttaatgctggtgttaacaaggttgccctcactcactttcacattttgcagTGTGTCGTCCCTGATGACCACCACGGAATCCATAATTGTAGAGATCCCCAAGGAAGAGGCACCGGCTCCAGCAATGGGTGGCATGGGTGGAATGGATTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - - - - - -ctgcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gctggtg