1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
...cgttcccaaatgctgtgtgaaatctgcaataaggagttaataagttcactggacatcaaatcttcatactgaatagctgtattaaattttcttattgcagCTTCCGTTCTCAAGAACTGTCTACATTGAGAAAACTGATTTTCGCCTTAAGGACTCAAAAGACTACTATGGGCTGGCCCCTGGTAAATCTGTCATGCTAA
species | Zea mays |
transcript | GRMZM2G048012_T01 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GGAAAATGTGGCCAGATGCTTCTGATACTGATGCTTCCTCTCACTATAAG CTTCCGTTCTCAAGAACTGTCTACATTGAGAAAACTGATTTTCGCCTTAAGEST: gi|67014180|gb|CO442929.1|CO442929
genomic: GGAAAATGTGGCCAGATGCTTCTGATACTGATGCTTCCTCTCACTATAAGgtacatctca ... cttattgcagCTTCCGTTCTCAAGAACTGTCTACATTGAGAAAACTGATTTTCGCCTTAAG
EST: GGAAAATGTGGCCAGATGCTTCTGATACTGATGCTTCCTCTCACTATAAG CTTCCGTTCTCAAGAACTGTCTACATTGAGAAAACTGATTTTCGCCTTAAGEST: gi|71304661|gb|DR788447.1|DR788447
genomic: GGAAAATGTGGCCAGATGCTTCTGATACTGATGCTTCCTCTCACTATAAGgtacatctca ... cttattgcagCTTCCGTTCTCAAGAACTGTCTACATTGAGAAAACTGATTTTCGCCTTAAG
EST: GGAAAATGTGGCCAGATGCTTCTGATACTGATGCTTCCTCTCACTATAAG CTTCCGTTCTCAAGAACTGTCTACATTGAGAAAACTGATTTTCGCCTTAAG
genomic: GGAAAATGTGGCCAGATGCTTCTGATACTGATGCTTCCTCTCACTATAAGgtacatctca ... cttattgcagCTTCCGTTCTCAAGAACTGTCTACATTGAGAAAACTGATTTTCGCCTTAAG
tcactggacatcaaatcttcatactgaatagctgtattaaattttcttattgcagCTTCCGTTCTCAAGAACTGTCTACATTGAGAAAACTGATTTTCGCCTTAAGGACTCAAAAGACTACTATGGGCTGGCCCCTGGTAAATCTGTCATGCTAA
ttttcttatt CT-rich tract
tgtattaaattttctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgttcccaaatgctgtgtgaaatctgcaataaggagttaataagttcactggacatcaaatcttcatactgaatagctgtattaaattttcttattgcagCTTCCGTTCTCAAGAACTGTCTACATTGAGAAAACTGATTTTCGCCTTAAGGACTCAAAAGACTACTATGGGCTGGCCCCTGGTAAATCTGTCATGCTAA
- - - - aatgctg
- - - - - - - - - - -atctgca
- - - - - - - - - - - - - - - - - - - - - - ttcactg
- - - - - - - - - - - - - - - - - - - - - - - - - - -catcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctgta