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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactggaccttttcttatacatatattttctcaattcctgatgccaaaaacattttaaatatcatttgattgtctgcttatgtttctttgcagATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC

Basic information

species Zea mays
transcript GRMZM2G011456_T03
intron # 16
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G011456_T03 (Zea mays), 3'ss of exon 16
lower sequence: LOC_Os02g04660.2 (Oryza sativa), 3'ss of exon 11
gtactggaccttt---tcttatacatatattttctcaattcctgatgccaaaaacattttaaatatcattt--------gattgtctg----cttatgtttctttgcagATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
||||||  | |||   || |     |||||||||    ||| ||    |||  | ||   | ||||| |||         ||  | ||    |||||||| |||||||||||||| ||||| ||  |||| |||||||| |||||| | ||| |||| 
gtactgaccttttctgtccttagtctatattttcatctttcttgg-atcaattaaatcccagatatccttttgttcttatatcatttgataacttatgttcctttgcagATACACTAGCTTTATTGAACCTATAACAGCATCAAAACTACACAACGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20803221|gb|BQ294271.1|BQ294271
EST:     TATGGTGCTCAACTATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATC                         ATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
genomic: GATGGTGCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATCgtactggacc ... ttctttgcagATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
EST: gi|21843268|gb|BQ703849.1|BQ703849
EST:     GATGGTGCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATC                         ATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
genomic: GATGGTGCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATCgtactggacc ... ttctttgcagATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
EST: gi|211483571|gb|FL225316.1|FL225316
EST:     GATGGTGCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATC                         ATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
genomic: GATGGTGCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATCgtactggacc ... ttctttgcagATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
EST: gi|60340216|gb|DN207189.1|DN207189
EST:     GATGGTGCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATC                         ATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
genomic: GATGGTGCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATCgtactggacc ... ttctttgcagATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
EST: gi|71300981|gb|DR786519.1|DR786519
EST:     GGATTTCCATTCCTTCATC                         ATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
genomic: GGATTTCCATTCCTTCATCgtactggacc ... ttctttgcagATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
EST: gi|26456816|gb|CA828399.1|CA828399
EST:     GATGGTGCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATC                         ATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
genomic: GATGGTGCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATCgtactggacc ... ttctttgcagATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
EST: gi|31558384|gb|CD527596.1|CD527596
EST:     GATGG-GCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATC                         ATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
genomic: GATGGTGCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATCgtactggacc ... ttctttgcagATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
EST: gi|26557923|gb|CA830158.1|CA830158
EST:     GATGGTGCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATC                         ATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
genomic: GATGGTGCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATCgtactggacc ... ttctttgcagATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
EST: gi|60397916|gb|DN230732.1|DN230732
EST:     GATGGTGCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATC                         ATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
genomic: GATGGTGCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATCgtactggacc ... ttctttgcagATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
EST: gi|71311076|gb|DR791852.1|DR791852
EST:     GATGGTGCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATC                         ATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
genomic: GATGGTGCTCAACGATTCTTGAAGCCTGATGGGATTTCCATTCCTTCATCgtactggacc ... ttctttgcagATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatgccaaaaacattttaaatatcatttgattgtctgcttatgtttctttgcagATACACCAGCTTCATCCAACCAATAACAGCGTCAAAATTGCACGACGAC
                                          tgtttcttt  CT-rich tract
       aaaaacattttaaata  TA-rich tract