1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
gtagattcagtacattttatatatgtgtttacacttatatttctcctgactttttccaacctatccaacaatgtgttgcttatgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTCCTGATAATATCATGGCATATGACAATGCTGTTTCGGCGCTTGGAAAAAT
species | Zea mays |
transcript | GRMZM5G887631_T01 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAG AGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACT-CEST: gi|60352763|gb|DN219736.1|DN219736
genomic: AGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAGgtagattcag ... atgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTC
EST: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAG AGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTCEST: gi|211015404|gb|FL213618.1|FL213618
genomic: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAGgtagattcag ... atgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTC
EST: CATGTTTTTCGCCCTCTAGTAGGAG AGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTCEST: gi|61119517|gb|DN560478.1|DN560478
genomic: CATGTTTTTCGCCCTCTAGTAGGAGgtagattcag ... atgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTC
EST: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAG AGGCCTTATCAAAATTAAACAATGTCATAAGGCATCCTGATGCACGACTTCEST: gi|33094008|gb|CF054002.1|CF054002
genomic: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAGgtagattcag ... atgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTC
EST: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAG AGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTCEST: gi|9028748|gb|BE238788.1|BE238788
genomic: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAGgtagattcag ... atgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTC
EST: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAG AGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTCEST: gi|9028539|gb|BE238534.1|BE238534
genomic: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAGgtagattcag ... atgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTC
EST: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAG AGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTCEST: gi|71770781|gb|DR968718.1|DR968718
genomic: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAGgtagattcag ... atgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTC
EST: TTTT-GCCCTCTAGTAGGAG AGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTCEST: gi|60396898|gb|DN229717.1|DN229717
genomic: TTTTCGCCCTCTAGTAGGAGgtagattcag ... atgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTC
EST: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAG AGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTCEST: gi|33091899|gb|CF051893.1|CF051893
genomic: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAGgtagattcag ... atgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTC
EST: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAG AGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTCEST: gi|32937992|gb|CF042811.1|CF042811
genomic: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAGgtagattcag ... atgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTC
EST: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAG AGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTCEST: gi|211015403|gb|FL213617.1|FL213617
genomic: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAGgtagattcag ... atgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTC
EST: CATGTTTTTCGCCCTCTAGTAGGAG AGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTCEST: gi|9953899|gb|BE640482.1|BE640482
genomic: CATGTTTTTCGCCCTCTAGTAGGAGgtagattcag ... atgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTC
EST: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAG AGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTCEST: gi|13149409|gb|BG319731.1|BG319731
genomic: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAGgtagattcag ... atgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTC
EST: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAG AGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTCEST: gi|13557759|gb|BG549115.1|BG549115
genomic: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAGgtagattcag ... atgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTC
EST: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAG AGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTC
genomic: GGGTGTATGTGCCGAGTTTGGTGGTCATGTTTTTCGCCCTCTAGTAGGAGgtagattcag ... atgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTC
atatttctcctgactttttccaacctatccaacaatgtgttgcttatgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTCCTGATAATATCATGGCATATGACAATGCTGTTTCGGCGCTTGGAAAAAT
tcctgac putative branch site (score: 300)
tgttttc putative PPT
ttatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagattcagtacattttatatatgtgtttacacttatatttctcctgactttttccaacctatccaacaatgtgttgcttatgttttcagAGGCCTTATCAAAATTAAACAATGTTATAAGGCATCCTGATGCACGACTTCCTGATAATATCATGGCATATGACAATGCTGTTTCGGCGCTTGGAAAAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT