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...ttcctatcaaaaaaaatgtttgttgtaagggggtatagtgcacacggactagtgtaagacggacttgtatgacggtaatgaactttcttcatgcttgcagGTATCACTTGGGGGTGGATTTGGTCAGCCACTCGGATCAAGCTGGGGAATCACTTTTGAGAATGTTCTGGGACCATCAAGACGCTGTCTTGTGCTGCTCT
species | Zea mays |
transcript | GRMZM2G469551_T02 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GGCTCCCCCGAAGCTGCTACACTTGTTCGCTGGATTTGCCAAAGCTACCG GTATCACTTGGGGGTGGATTTGGTCAGCCACTCGGATCAAGCTGGGGAATCEST: gi|50334211|gb|CO529337.1|CO529337
genomic: GGCTCCCCCGAAGCTGCTACACTTGTTCGCTGGATTTGCCAAAGCTACCGgtaggtgcat ... atgcttgcagGTATCACTTGGGGGTGGATTTGGTCAGCCACTCGGATCAAGCTGGGGAATC
EST: GGCTCCCCCGAAGCTGCTACACTTGTTCGCTGGATTTGCCAAAGCTACCG GTATCACTTGGGGGTGGATTTGGTCAGCCACTCGGATCAAGCTGGGGAATC
genomic: GGCTCCCCCGAAGCTGCTACACTTGTTCGCTGGATTTGCCAAAGCTACCGgtaggtgcat ... atgcttgcagGTATCACTTGGGGGTGGATTTGGTCAGCCACTCGGATCAAGCTGGGGAATC
ggactagtgtaagacggacttgtatgacggtaatgaactttcttcatgcttgcagGTATCACTTGGGGGTGGATTTGGTCAGCCACTCGGATCAAGCTGGGGAATCACTTTTGAGAATGTTCTGGGACCATCAAGACGCTGTCTTGTGCTGCTCT
ctttcttcatgctt CT-rich tract
taatgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcctatcaaaaaaaatgtttgttgtaagggggtatagtgcacacggactagtgtaagacggacttgtatgacggtaatgaactttcttcatgcttgcagGTATCACTTGGGGGTGGATTTGGTCAGCCACTCGGATCAAGCTGGGGAATCACTTTTGAGAATGTTCTGGGACCATCAAGACGCTGTCTTGTGCTGCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - aaaaaaa
- - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - -gcacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgtatg