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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgaaccttttcttatacatatatttccttaattcctgatgtcaaaaatatgttaaataatatcatttgattgtttgcttatgtttctttgtagATACACCAGCTTCATCCAACCAATAACAGCATCAAAATTGCACAACGAT

Basic information

species Zea mays
transcript GRMZM2G169927_T02
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G169927_T02 (Zea mays), 3'ss of exon 15
lower sequence: LOC_Os02g04660.2 (Oryza sativa), 3'ss of exon 11
gtactgaaccttt---tcttatacatatatttccttaattcctgatgtcaaaaatatgttaaataa-----tatcatttgattgtttg----cttatgtttctttgtagATACACCAGCTTCATCCAACCAATAACAGCATCAAAATTGCACAACGAT
||||||| | |||   || |     ||||||| | |  ||| ||   ||||  | ||   | |||      | |  ||  ||  ||||    |||||||| ||||| |||||||| ||||| ||  |||| ||||||||||||||| | |||||||||
gtactgaccttttctgtccttagtctatattttcatctttcttgg-atcaattaaatcccagatatccttttgttcttatatcatttgataacttatgttcctttgcagATACACTAGCTTTATTGAACCTATAACAGCATCAAAACTACACAACGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211483570|gb|FL225315.1|FL225315
EST:     TCTTGAAGCCTGATGGGATTTCCATTCCTTCATC                         ATACACCAGCTTCATCCAACCAATAACAGCATCAAAATTGCACAACGAT
genomic: TCTTGAAGCCTGATGGGATTTCCATTCCTTCATCgtactgaacc ... ttctttgtagATACACCAGCTTCATCCAACCAATAACAGCATCAAAATTGCACAACGAT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtcaaaaatatgttaaataatatcatttgattgtttgcttatgtttctttgtagATACACCAGCTTCATCCAACCAATAACAGCATCAAAATTGCACAACGAT
                         atttgat  putative branch site (score: 5)
                                          tgtttcttt  putative PPT
     aaaatatgttaaataa  TA-rich tract