Sequence
atgc intronic sequence ATGC exonic sequence...aaacagcattctgtttgtagttgctacatctgggctgattcagttttgtttatccttttttaatccttcattttcctttgtttctgacctttttttgtagGGCATTACTTCATTTCCTTGATCCAGTCAAATTCAACAGCAAGGATAGTTTTGTTGAGAGATACAAAAATTTGAGTTCCTTCAACGAAACTGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G141258_T01 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os07g46590.1 (Oryza sativa), 3'ss of exon 3
---------------------------------------------------------------aaacagcattctgtttgtagttgctacatctgggctg---attcagttttgtttatccttttttaatccttcattttcctttgtttctgacctttt----tttgtagGGCATTACTTCATTTCCTTGATCCAGTCAAATTCAACAGCAAGGATAGTTTTGTTGAGAGATACAAAAATTTGAGTTCCTTCAACGAAACTGAG
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gtatgcgattttatgtagatttatggttggaagttcatattcttattgtgaataggtgactagagactgcaacatgttcatagctgttgcattttgcctctatatatatttttgttttacctttattattctttgtcccatttttgctgagtgtattttaaaatctgcagGGCGTTACTTCATTTCCTTGATCCATCTAAATTCAACAGCAAGGATATATTTGTTGAGAGATACAAAAATTTGAGTTCCTTCAATGAAACTGAG
upper sequence: GRMZM2G141258_T01 (Zea mays), 3'ss of exon 14
lower sequence: GLYMA14G03780.1 (Glycine max), 3'ss of exon 14
--aaacagcattctgtt-tgta-gttgct--acatctgggctgattcagttttgtttatccttttttaatccttcattttcctttgtttctgacctttttttgtagGGCATTACTTCATTTCCTTGATCCAGTCAAATTCAACAGCAAGGATAGTTTTGTTGAGAGATACAAAAATTTGAGTTCCTTCAACGAAACTGAG
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ccaaattgatttctattatgtgtgttgtctggtattttgtttgctttggttttcttgtttgtttgacaattcccc----tcccctctccct--ccctgttttgtagGGCTTTGCTTCATTTCCTTGATCCAGACAAGTTCAGGAGCAAGGATGAATTTGTTCAAAACTATAAAAATCTGAGCTCTTTTAATGAGAATGAG
upper sequence: GRMZM2G141258_T01 (Zea mays), 3'ss of exon 14
lower sequence: GLYMA02G45000.1 (Glycine max), 3'ss of exon 14
--aaacagcattctgtttgtagttgctacatctgggctgattcagttttgtttatccttttttaatccttcattttcctttgtt-tctgacctttttttgtagGGCATTACTTCATTTCCTTGATCCAGTCAAATTCAACAGCAAGGATAGTTTTGTTGAGAGATACAAAAATTTGAGTTCCTTCAACGAAACTGAG
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ttaaattgatttctatt-atgtgtgttgtctgttattttgtttcctttggttt--tcttgtttgtttgacaattcgcctcccctctccctccctgttttgtagGGCTTTGCTTCATTTCCTTGATCCGGACAAGTTCAGGAGCAAGGATGAATTTGTTCAGAACTATAAGAATCTGAGTTCTTTTAATGAGAATGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33095165|gb|CF055159.1|CF055159EST: AAGCTGCTTATCACGGGAACACCTTTGCAGAACAGTGTGGAAGAGCTTTG GGCATTACTTCATTTCCTTGATCCAGTCAAATTCAACAGCAAGGATAGTTT
genomic: AAGCTGCTTATCACGGGAACACCTTTGCAGAACAGTGTGGAAGAGCTTTGgtacggcatc ... ttttttgtagGGCATTACTTCATTTCCTTGATCCAGTCAAATTCAACAGCAAGGATAGTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtttatccttttttaatccttcattttcctttgtttctgacctttttttgtagGGCATTACTTCATTTCCTTGATCCAGTCAAATTCAACAGCAAGGATAGTTTTGTTGAGAGATACAAAAATTTGAGTTCCTTCAACGAAACTGAG
ttctgac putative branch site (score: 2)
tccttcattttccttt CT-rich tract
tatccttttttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aaacagcattctgtttgtagttgctacatctgggctgattcagttttgtttatccttttttaatccttcattttcctttgtttctgacctttttttgtagGGCATTACTTCATTTCCTTGATCCAGTCAAATTCAACAGCAAGGATAGTTTTGTTGAGAGATACAAAAATTTGAGTTCCTTCAACGAAACTGAG
-aacagca
- - - - - -tgtttgt
- - - - - - - - - - - -ctacatc
- - - - - - - - - - - - - - - tgggctg