1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtttgtccatgaaggatatttttgaagcactccatttctttgggtgtaattaacttcttgactcactctatttagGTTGTCGCCACGGAAGTTCTTGGTGGTGGGAAGTTTTATGTTCAGACAGTGGGTGACCAGAGGGTGGCTTCAATTCAACAGCAGCTTGCATCTTTGAAAC
species | Zea mays |
transcript | GRMZM2G136296_T02 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATGCTTCAAATGGATCCACACCTGAATCGAAACAAAAGGAAATCCTCAAG GTTGTCGTCACTGAAGTTCTTGGTGGTGGGAAGTTTTATGTTCAGACAGTGEST: gi|29946640|gb|CB816251.1|CB816251
genomic: ATGCTTCAAATGGATCCGCACCTGAATCGAAACAAAAGGAAATCCTCAAGgtttgtccat ... ctctatttagGTTGTCGCCACGGAAGTTCTTGGTGGTGGGAAGTTTTATGTTCAGACAGTG
EST: ATGCTTCAAATGGATCCGCACCTGAATCGAAACAAAAGGAAATCCTCAAG GTTGTCGCCACGGAAGTTCTTGGTEST: gi|67011396|gb|CO440145.1|CO440145
genomic: ATGCTTCAAATGGATCCGCACCTGAATCGAAACAAAAGGAAATCCTCAAGgtttgtccat ... ctctatttagGTTGTCGCCACGGAAGTTCTTGGT
EST: ATGCTTCAAATGGATCCACACCTGAATCGAAACAAAAGGAAATCCTCAAG GTTGTCGTCACTGAAGTTCTTGGTGGTGGGAAGTTTTATGTTCAGACAGTGEST: gi|32804673|gb|CD956909.1|CD956909
genomic: ATGCTTCAAATGGATCCGCACCTGAATCGAAACAAAAGGAAATCCTCAAGgtttgtccat ... ctctatttagGTTGTCGCCACGGAAGTTCTTGGTGGTGGGAAGTTTTATGTTCAGACAGTG
EST: GATCCCCACCTGAATCGAAACAAAAGGAAATCCTCAAG GTTGTCGTCACGGAAGTTCTTGGTGGTGGGAAGTTTTATGTTCAGACAGTGEST: gi|211388224|gb|FL201917.1|FL201917
genomic: GATCCGCACCTGAATCGAAACAAAAGGAAATCCTCAAGgtttgtccat ... ctctatttagGTTGTCGCCACGGAAGTTCTTGGTGGTGGGAAGTTTTATGTTCAGACAGTG
EST: ATGCTTCAAATGGATCCACACCTGAATCGAAACAAAAGGAAATCCTCAAG GTTGTCGTCACTGAAGTTCTTGGTGGTGGGAAGTEST: gi|211388219|gb|FL201912.1|FL201912
genomic: ATGCTTCAAATGGATCCGCACCTGAATCGAAACAAAAGGAAATCCTCAAGgtttgtccat ... ctctatttagGTTGTCGCCACGGAAGTTCTTGGTGGTGGGAAGT
EST: ATGCTTCAAATGGATCCACACCTGAATCGAAACAAAAGGAAATCCTCAAG GTTGTCGTCACTGAAGTTCTTGGTGGTGGGAAGTTTTATGTTCAGACAGTGEST: gi|67040223|gb|CO466478.1|CO466478
genomic: ATGCTTCAAATGGATCCGCACCTGAATCGAAACAAAAGGAAATCCTCAAGgtttgtccat ... ctctatttagGTTGTCGCCACGGAAGTTCTTGGTGGTGGGAAGTTTTATGTTCAGACAGTG
EST: ATGCTTCAAATGGATCCACACCTGAATCGAAACAAAAGGAAATCCTCAAG GTTGTCGTCACTGAAGTTCTTGGTGGTGGGAAGTTTTATGTTCAGACAGTGEST: gi|211483958|gb|FL010661.1|FL010661
genomic: ATGCTTCAAATGGATCCGCACCTGAATCGAAACAAAAGGAAATCCTCAAGgtttgtccat ... ctctatttagGTTGTCGCCACGGAAGTTCTTGGTGGTGGGAAGTTTTATGTTCAGACAGTG
EST: ATGCTTCAAATGGATCCACACCTGAATCGAAACAAAAGGAAATCCTCAAG GTTGTCGTCACTGAAGTTCTTGGTGGTGGGAAGTTTTATGTTCAGACAGTG
genomic: ATGCTTCAAATGGATCCGCACCTGAATCGAAACAAAAGGAAATCCTCAAGgtttgtccat ... ctctatttagGTTGTCGCCACGGAAGTTCTTGGTGGTGGGAAGTTTTATGTTCAGACAGTG
tttgaagcactccatttctttgggtgtaattaacttcttgactcactctatttagGTTGTCGCCACGGAAGTTCTTGGTGGTGGGAAGTTTTATGTTCAGACAGTGGGTGACCAGAGGGTGGCTTCAATTCAACAGCAGCTTGCATCTTTGAAAC
gactcac putative branch site (score: 2)
ctcactct CT-rich tract
taattaactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttgtccatgaaggatatttttgaagcactccatttctttgggtgtaattaacttcttgactcactctatttagGTTGTCGCCACGGAAGTTCTTGGTGGTGGGAAGTTTTATGTTCAGACAGTGGGTGACCAGAGGGTGGCTTCAATTCAACAGCAGCTTGCATCTTTGAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT