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gtaagtattatataccatacattgcataagtgtactttcatgatgaaataatgcatatatatgttctgattttccttcatctatggtgccccttgtagAAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGGCTGGTCGATGCATATCAAAACAGTACCGATATCCTGCAAAGCACTATTT
species | Zea mays |
transcript | GRMZM2G135968_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CGGAGCCTTTTCCCCATGATCTTGTTGAGAAGTTAGAAGAATACCTGGAT AAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGGEST: gi|5525523|gb|AI861416.1|AI861416
genomic: CGGAGCCTTTTCCCCATGATCTTGTTGAGAAGTTAGAAGAATACCTGGATgtaagtatta ... ccccttgtagAAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGG
EST: CGGAGCCTTTTCCCCATGATCTTGTTGAGAAGTTAGAAGAATACCTGGAT AAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGGEST: gi|37376379|gb|CF624708.1|CF624708
genomic: CGGAGCCTTTTCCCCATGATCTTGTTGAGAAGTTAGAAGAATACCTGGATgtaagtatta ... ccccttgtagAAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGG
EST: CGGAGCCTTTTCCCCATGATCTTGTTGAGAAGTTAGAAGAATACCTGGAT AAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGGEST: gi|60343412|gb|DN210385.1|DN210385
genomic: CGGAGCCTTTTCCCCATGATCTTGTTGAGAAGTTAGAAGAATACCTGGATgtaagtatta ... ccccttgtagAAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGG
EST: CGGAGCCTTTTCCCCATGATCTTGTTGAGAAGTTAGAAGAATACCTGGAT AAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGGEST: gi|5713983|gb|AI943968.1|AI943968
genomic: CGGAGCCTTTTCCCCATGATCTTGTTGAGAAGTTAGAAGAATACCTGGATgtaagtatta ... ccccttgtagAAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGG
EST: CGGAGCCTTTTCCCCATGATCTTGTTGAGAAGTTAGAAGAATACCTGGAT AAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGGEST: gi|60398231|gb|DN231047.1|DN231047
genomic: CGGAGCCTTTTCCCCATGATCTTGTTGAGAAGTTAGAAGAATACCTGGATgtaagtatta ... ccccttgtagAAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGG
EST: CGGAGCCTTTTCCCCATGATCTTGTTGAGAAGTTAGAAGAATACCTGGAT AAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGGEST: gi|60397588|gb|DN230404.1|DN230404
genomic: CGGAGCCTTTTCCCCATGATCTTGTTGAGAAGTTAGAAGAATACCTGGATgtaagtatta ... ccccttgtagAAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGG
EST: CGGAGCCTTTTCCCCATGATCTTGTTGAGAAGTTAGAAGAATACCTGGAT AAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGGEST: gi|31357399|gb|CD441756.1|CD441756
genomic: CGGAGCCTTTTCCCCATGATCTTGTTGAGAAGTTAGAAGAATACCTGGATgtaagtatta ... ccccttgtagAAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGG
EST: CGGAGCCTTTTCCCCATGATCTTGTTGAGAAGTTAGAAGAATACCTGGAT AAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGG
genomic: CGGAGCCTTTTCCCCATGATCTTGTTGAGAAGTTAGAAGAATACCTGGATgtaagtatta ... ccccttgtagAAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGG
tgaaataatgcatatatatgttctgattttccttcatctatggtgccccttgtagAAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGGCTGGTCGATGCATATCAAAACAGTACCGATATCCTGCAAAGCACTATTT
ttctgat putative branch site (score: 194)
tgcccctt putative PPT
taatgcatatatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtattatataccatacattgcataagtgtactttcatgatgaaataatgcatatatatgttctgattttccttcatctatggtgccccttgtagAAACTTGAAGGGCAACTCGTGGACTTGTCTTCCTTATTGTATGACCACCGGCTGGTCGATGCATATCAAAACAGTACCGATATCCTGCAAAGCACTATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG