1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttcagtcagtcttattcgtagtttgttatctttccctttctcatgttttgggcaaggcagaagcctttcgtaagctgacatctgtgttttcctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTACCTGTGACCAGCTAGTAAGATGGTTACACTACGTCGTTTAGTGTTTGGA
species | Zea mays |
transcript | GRMZM2G111510_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTAEST: gi|32835438|gb|CD975116.1|CD975116
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACCTCGGEST: gi|211013122|gb|FL458830.1|FL458830
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGG
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTYTCAAGTTCCAWGTTCCCRAGGAGWACTTCGGTTTYTAATTAEST: gi|211130554|gb|FL442100.1|FL442100
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTAEST: gi|60359551|gb|DN226524.1|DN226524
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTAEST: gi|71432125|gb|DR813175.1|DR813175
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTAEST: gi|60341580|gb|DN208553.1|DN208553
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTAEST: gi|211443974|gb|FL182596.1|FL182596
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTEST: gi|71759141|gb|DR957078.1|DR957078
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTT
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTAEST: gi|78088730|gb|DV517123.1|DV517123
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTTTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTTTAATTTEST: gi|40303060|gb|CK347447.1|CK347447
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTAEST: gi|60336621|gb|DN203594.1|DN203594
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTAEST: gi|83279155|gb|DV943163.1|DV943163
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTAEST: gi|18650379|gb|BM499198.1|BM499198
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTAEST: gi|91053260|gb|EB163678.1|EB163678
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTTTAATTAEST: gi|71316663|gb|DR795006.1|DR795006
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTTTAATTAEST: gi|60342489|gb|DN209462.1|DN209462
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTAEST: gi|32833310|gb|CD972988.1|CD972988
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTEST: gi|60401163|gb|DN233970.1|DN233970
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGT
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTAEST: gi|37426318|gb|CF650911.1|CF650911
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTAEST: gi|60351350|gb|DN218323.1|DN218323
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTAEST: gi|33092918|gb|CF052912.1|CF052912
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTA
EST: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAG GCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGT
genomic: CTGCTGGGAGAGAGAACGATCATAGTGACGCAGATATAGAATTTGCTAAGgtatgaaaaa ... cctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGT
ttttgggcaaggcagaagcctttcgtaagctgacatctgtgttttcctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTACCTGTGACCAGCTAGTAAGATGGTTACACTACGTCGTTTAGTGTTTGGA
agctgac putative branch site (score: 27)
ttttcctgtt putative PPT
tgttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttcagtcagtcttattcgtagtttgttatctttccctttctcatgttttgggcaaggcagaagcctttcgtaagctgacatctgtgttttcctgttatagGCCATCGGTCTCAAGTTCCATGTTCCCGAGGAGTACTTCGGTTTCTAATTACCTGTGACCAGCTAGTAAGATGGTTACACTACGTCGTTTAGTGTTTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - -tgttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgttt