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gtatgattctagagcccacactccaccgaagtaattatcactgtaccttcagtgcctgatgatggtcttttgttattccagGGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCAATATCCGCAGAG
species | Zea mays |
transcript | GRMZM2G082664_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AAAGTGCGATTCAGTTGATATATCTATTGCTGTTGCTACAGAGAAG GGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCAEST: gi|61119124|gb|DN560085.1|DN560085
genomic: AAAGTGCGATTCAGTTGATATATCTATTGCTGTTGCTACAGAGAAGgtatgattct ... gttattccagGGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCA
EST: CTCAAAAGTGCGATTCAGTTGATATATCTATTGCTGTTGCTACAGAGAAG GGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCAEST: gi|211174833|gb|FL413958.1|FL413958
genomic: CTCAAAAGTGCGATTCAGTTGATATATCTATTGCTGTTGCTACAGAGAAGgtatgattct ... gttattccagGGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCA
EST: TATATCTATTGCTGTTGCTACAGAGAAG GGCCTGATGACCCCAATAATAAGGAATGCTGATCAAAAGACTATATCTGCAEST: gi|60347222|gb|DN214195.1|DN214195
genomic: TATATCTATTGCTGTTGCTACAGAGAAGgtatgattct ... gttattccagGGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCA
EST: CCCAAAAGTGTGATTCAGTTGATATATCTATTGCTGTTGCTACAGAGAAG GGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCAEST: gi|50331519|gb|CO526645.1|CO526645
genomic: CTCAAAAGTGCGATTCAGTTGATATATCTATTGCTGTTGCTACAGAGAAGgtatgattct ... gttattccagGGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCA
EST: CTCAAAAGTGCGATTCAGTTGATATATCTATTGCTGTTGCTACAGAGAAG GGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCAEST: gi|37398003|gb|CF636310.1|CF636310
genomic: CTCAAAAGTGCGATTCAGTTGATATATCTATTGCTGTTGCTACAGAGAAGgtatgattct ... gttattccagGGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCA
EST: CTCAAAAGTGCGATTCAGTTGATATATCTATTGCTGTTGCTACAGAGAAG GGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCAEST: gi|40337298|gb|CK371368.1|CK371368
genomic: CTCAAAAGTGCGATTCAGTTGATATATCTATTGCTGTTGCTACAGAGAAGgtatgattct ... gttattccagGGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCA
EST: CTCAAAAGTGCGATTCAGTTGATATATCTATTGCTGTTGCTACAGAGAAG GGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCAEST: gi|50331482|gb|CO526608.1|CO526608
genomic: CTCAAAAGTGCGATTCAGTTGATATATCTATTGCTGTTGCTACAGAGAAGgtatgattct ... gttattccagGGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCA
EST: CTCAAAAGTGCGATTCAGTTGATATATCTATTGCTGTTGCTACAGAGAAG GGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCA
genomic: CTCAAAAGTGCGATTCAGTTGATATATCTATTGCTGTTGCTACAGAGAAGgtatgattct ... gttattccagGGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCA
cgaagtaattatcactgtaccttcagtgcctgatgatggtcttttgttattccagGGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCAATATCCGCAGAG
gcctgat putative branch site (score: 84)
tcttttgttattcc putative PPT
ttttgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgattctagagcccacactccaccgaagtaattatcactgtaccttcagtgcctgatgatggtcttttgttattccagGGCCTGATGACCCCAATAATAAGGAATGCGGATCAAAAGACTATATCTGCAATATCCGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA