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gtgtgatccgcgcattgtttctgttgtaaatctgactttattttcttgtcttctcacacaacctttttatgtatagGTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGCAGCTGAGATGCTGCAGAACAAATATATCGAGATTAGACAG
species | Zea mays |
transcript | GRMZM2G075978_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GCTTCATCCACAAACACAGAGGGGAGTGAAGGAGAGAATTGGCTGAAAAG GTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGCEST: gi|211443723|gb|FK945773.1|FK945773
genomic: GCTTCATCCACAAACACAGAGGGGAGTGAAGGAGAGAATTGGCTGAAAAGgtgtgatccg ... ttatgtatagGTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGC
EST: GAATTGGCTGAAAAG GTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGCEST: gi|211443724|gb|FK945774.1|FK945774
genomic: GAATTGGCTGAAAAGgtgtgatccg ... ttatgtatagGTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGC
EST: GAATTGGCTGAAAAG GTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGCEST: gi|76933305|gb|DV173408.1|DV173408
genomic: GAATTGGCTGAAAAGgtgtgatccg ... ttatgtatagGTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGC
EST: GCTTCATCCACAAACACAGAGGGGAGTGAAGGAGAGAATTGGCTGAAAAG GTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGCEST: gi|211443722|gb|FK945772.1|FK945772
genomic: GCTTCATCCACAAACACAGAGGGGAGTGAAGGAGAGAATTGGCTGAAAAGgtgtgatccg ... ttatgtatagGTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGC
EST: AAACACAGAGGGGAGTGAAGGAGAGAATTGGCTGAAAAG GTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGCEST: gi|211441602|gb|FK945769.1|FK945769
genomic: AAACACAGAGGGGAGTGAAGGAGAGAATTGGCTGAAAAGgtgtgatccg ... ttatgtatagGTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGC
EST: GAATTGGCTGAAAAG GTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGCEST: gi|22546223|gb|BU098534.1|BU098534
genomic: GAATTGGCTGAAAAGgtgtgatccg ... ttatgtatagGTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGC
EST: GCTTCATCCACAAACACAGAGGGGAGTGAAGGAGAGAATTGGCTGAAAAG GTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGC
genomic: GCTTCATCCACAAACACAGAGGGGAGTGAAGGAGAGAATTGGCTGAAAAGgtgtgatccg ... ttatgtatagGTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGC
tgttgtaaatctgactttattttcttgtcttctcacacaacctttttatgtatagGTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGCAGCTGAGATGCTGCAGAACAAATATATCGAGATTAGACAG
ttctcac putative branch site (score: 16)
cctttttat putative PPT
tttttatgtata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgatccgcgcattgtttctgttgtaaatctgactttattttcttgtcttctcacacaacctttttatgtatagGTACATTGAGTACTGCCGCGCCACATGCAAACCACGGCTTTCAGAAAAAGCAGCTGAGATGCTGCAGAACAAATATATCGAGATTAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG