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gtcattcttctatctgcctccgagtttgctgttattaacagtttttaaagattttggttgcactcacttaaattccatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCCCTTGTTAAACTACAT
species | Zea mays |
transcript | GRMZM2G702159_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCCEST: gi|91875691|gb|EB405648.1|EB405648
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... ccatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCC
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCCEST: gi|166655688|gb|EG257895.1|EG257895
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... ccatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCC
EST: TGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|33285753|gb|CF075548.1|CF075548
genomic: TGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... ccatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCC
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACEST: gi|211458173|gb|FL467225.1|FL467225
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... ccatttctagGCTGATGCCTTTGCCAAGAAC
EST: ACTTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCCEST: gi|166658027|gb|EG246640.1|EG246640
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... ccatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCC
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGEST: gi|33770597|gb|CF272891.1|CF272891
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... ccatttctagGCTGATGCCTTTGCCAAGAACCTTGG
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCCGCTCCGAGCGGCC
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... ccatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCC
tgttattaacagtttttaaagattttggttgcactcacttaaattccatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCCCTTGTTAAACTACAT
ttccatttct CT-rich tract
ttaacagtttttaaag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcattcttctatctgcctccgagtttgctgttattaacagtttttaaagattttggttgcactcacttaaattccatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCGGCCCTTGTTAAACTACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC