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gtaagtaacagtttttatgcacatgcacgcacgcttatgtccttctagttgctgttttcatcacctcgtggtgttactgcctagggtcagcttcggtttgcttgtagcctcatttgcattaccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAGAAATTGAGGCAGTACTGTTAGAG
species | Zea mays |
transcript | GRMZM2G460078_T02 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAGEST: gi|5847518|gb|AW000597.1|AW000597
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAGEST: gi|87153333|gb|DY398122.1|DY398122
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAGEST: gi|32867326|gb|CF007008.1|CF007008
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: GTAGATGAGGAAGGATACTTCATAATTTTGGGAC GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAGEST: gi|113694423|gb|DW847952.1|DW847952
genomic: GTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: TACTTCATAATTTTGGGAC GCACAAATAGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAEST: gi|37385309|gb|CF629791.1|CF629791
genomic: TACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAAT-GCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTA
EST: AGGTGTTACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAGEST: gi|17921701|gb|BM259352.1|BM259352
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAGEST: gi|93012881|gb|EB638401.1|EB638401
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAGEST: gi|211208064|gb|FL437175.1|FL437175
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAGEST: gi|17970088|gb|BM276854.1|BM276854
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTT-ATAATTTTGGGAC GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAGEST: gi|78120378|gb|DV538762.1|DV538762
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
EST: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC GCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
genomic: AGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGACgtaagtaaca ... ccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAG
ctgcctagggtcagcttcggtttgcttgtagcctcatttgcattaccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAGAAATTGAGGCAGTACTGTTAGAG
ttacctt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaacagtttttatgcacatgcacgcacgcttatgtccttctagttgctgttttcatcacctcgtggtgttactgcctagggtcagcttcggtttgcttgtagcctcatttgcattaccttgtgcagGCACAAATGCCGACATTATGAAATTTGGCGGTTACAAGCTGTCAGCATTAGAAATTGAGGCAGTACTGTTAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG