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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attttcccaaatattgtccttcgaggcttcacttctaaaaaggtatattattaatccgttagtggtctaatgtgaacttatttgctgcatgcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTTTACATAG

Basic information

species Zea mays
transcript GRMZM2G381933_T03
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G381933_T02 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os01g15490.2 (Oryza sativa), 3'ss of exon 13
-----attttcccaaatattgtccttcgaggcttcacttctaaaaaggtatattatta-atccgttagtggtctaatgtgaacttatttgctgcatgcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTTTACATAG
     | ||  | |   | | |  || ||   || |||| |  | | |||  | ||||  |   | |||  ||| ||   |||||  || |||  | ||| |||||||| |||||||  ||||  |||||||||| ||| |||| ||||||||||| |||||||
tctccaattaactagcaagt-taattggaacttttacttttggagaagtacttcattatgtatctcagta-tctgata--aactt--ttactgtgttctttttcagGTTAAAATTGCCCCAGTGGTTGCAAAACTATGCATAGATTTTTCTGATGTATACATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50332159|gb|CO527285.1|CO527285
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|33285805|gb|CF075600.1|CF075600
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATG
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATG
EST: gi|166510278|gb|EG235397.1|EG235397
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGC
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGC
EST: gi|4628225|gb|AI619099.1|AI619099
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|60359540|gb|DN226513.1|DN226513
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|60396268|gb|DN229137.1|DN229137
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|60351624|gb|DN218597.1|DN218597
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|71756800|gb|DR954737.1|DR954737
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTTTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|60394781|gb|DN227651.1|DN227651
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|71767359|gb|DR965296.1|DR965296
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|33285569|gb|CF075364.1|CF075364
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTGCACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGNT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|71767360|gb|DR965297.1|DR965297
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|74242521|gb|DT650435.1|DT650435
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|211076372|gb|FL154532.1|FL154532
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|37386793|gb|CF630585.1|CF630585
EST:     GCCATCAAAACC-TTTGTGTNCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: GCCATCAAAACCTTTTGTGT-CAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|78087486|gb|DV515879.1|DV515879
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|211222854|gb|FL456564.1|FL456564
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|8665487|gb|BE186303.1|BE186303
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCCTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|60351898|gb|DN218871.1|DN218871
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|8516501|gb|BE123226.1|BE123226
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGGT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|67023704|gb|CO452453.1|CO452453
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTG
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTG
EST: gi|211035729|gb|FL441186.1|FL441186
EST:     AAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCNTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: AAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattattaatccgttagtggtctaatgtgaacttatttgctgcatgcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTTTACATAG
                                              cttgttc  CT-rich tract
                             aacttattt  TA-rich tract