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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...attttcccaaatattgtccttcgaggcttcacttctaaaaaggtatattattaatccgttagtggtctaatgtgaacttatttgctgcatgcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTTTACATAG

Basic information

species Zea mays
transcript GRMZM2G381933_T02
intron # 13
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G381933_T02 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os01g15490.2 (Oryza sativa), 3'ss of exon 13
-----attttcccaaatattgtccttcgaggcttcacttctaaaaaggtatattatta-atccgttagtggtctaatgtgaacttatttgctgcatgcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTTTACATAG
     | ||  | |   | | |  || ||   || |||| |  | | |||  | ||||  |   | |||  ||| ||   |||||  || |||  | ||| |||||||| |||||||  ||||  |||||||||| ||| |||| ||||||||||| |||||||
tctccaattaactagcaagt-taattggaacttttacttttggagaagtacttcattatgtatctcagta-tctgata--aactt--ttactgtgttctttttcagGTTAAAATTGCCCCAGTGGTTGCAAAACTATGCATAGATTTTTCTGATGTATACATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33285805|gb|CF075600.1|CF075600
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATG
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATG
EST: gi|166510278|gb|EG235397.1|EG235397
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGC
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGC
EST: gi|33285569|gb|CF075364.1|CF075364
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTGCACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGNT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|211076372|gb|FL154532.1|FL154532
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|78087486|gb|DV515879.1|DV515879
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTT
EST: gi|67023704|gb|CO452453.1|CO452453
EST:     TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGAT                         GTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTG
genomic: TGCCATCAAAACCTTTTGTGTCAAAGCATCTCAGCACTACACTTTCAGATgtatgtctcc ... gcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattattaatccgttagtggtctaatgtgaacttatttgctgcatgcttgttcagGTTCAAATTGCTTCAGTCCTTGCAAAACTGTGCTTAGAGTTTTCTGATGTTTACATAG
                                              cttgttc  CT-rich tract
                             aacttattt  TA-rich tract