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gtgagtggcagattctgcaattattgaggatcattttgtattccatagtttgtcaaagtgaggataatgctggtgtatgcgcagATCATCTTTGCTTGAACGTATGCCTGCATTGGATGAAGCAAATTATTTGGTGAAGAGAGCTGCTTCTACACAGGCTGCAGTTTCATCTGTAAATTCTGCT
species | Zea mays |
transcript | GRMZM2G017421_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: CAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAGTCGATAAA ATCATCTTTGCTTGAACGTATGCCTGCATTGGATGAAGCAAATTATTTGGTEST: gi|8551657|gb|BE128828.1|BE128828
genomic: CAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAGTCGATAAAgtgagtggca ... gtatgcgcagATCATCTTTGCTTGAACGTATGCCTGCATTGGATGAAGCAAATTATTTGGT
EST: CAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAGTCGATAAA ATCATCTTTGCTTGAACGTATGCCTGCATTGGATGAAGCAAATTATTTGGTEST: gi|32931345|gb|CF036157.1|CF036157
genomic: CAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAGTCGATAAAgtgagtggca ... gtatgcgcagATCATCTTTGCTTGAACGTATGCCTGCATTGGATGAAGCAAATTATTTGGT
EST: CAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAGTCGATAAA ATCATCTTTGCTTGAACGTATGCCTGCATTGGATGAAGCAAATTATTTGGTEST: gi|78180334|gb|DV550707.1|DV550707
genomic: CAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAGTCGATAAAgtgagtggca ... gtatgcgcagATCATCTTTGCTTGAACGTATGCCTGCATTGGATGAAGCAAATTATTTGGT
EST: CAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAGTCGATAAA ATCATCTTTGCTTGAACGTATGCCTGCATTGGATGAAGCAAATTATTTGGT
genomic: CAAAGATCTATTGAATTCAGTTCCATTATACAAAGACATCAGTCGATAAAgtgagtggca ... gtatgcgcagATCATCTTTGCTTGAACGTATGCCTGCATTGGATGAAGCAAATTATTTGGT
atcattttgtattccatagtttgtcaaagtgaggataatgctggtgtatgcgcagATCATCTTTGCTTGAACGTATGCCTGCATTGGATGAAGCAAATTATTTGGTGAAGAGAGCTGCTTCTACACAGGCTGCAGTTTCATCTGTAAATTCTGCT
tttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtggcagattctgcaattattgaggatcattttgtattccatagtttgtcaaagtgaggataatgctggtgtatgcgcagATCATCTTTGCTTGAACGTATGCCTGCATTGGATGAAGCAAATTATTTGGTGAAGAGAGCTGCTTCTACACAGGCTGCAGTTTCATCTGTAAATTCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG