1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtatgctttctactatcatacttcaatacggttaatttactatagggactctttctagcctcataaccctcttgttgatttaggtacataatgttaatatatgagttggtaactttaacctcgtgatttttactgcaaatgtcttataacctttccctttttcaacagTCATTGAGGTTGTTAGGGGATGCATCCGTGTCCTTTGAGAAAAATTGTGTCAGGGGAATTCAAGCAAACCACAAGAGAATTTCACAACTTTTGCATGAG
species | Zea mays |
transcript | GRMZM2G010823_T01 |
intron # | 13 |
splice site | 3' |
intron type | U2 |
EST: ATTTTGAACTGAATGTTTTTAAGCCAATGATCGCAGCCGGATTACTTCGA TCATTGAGGTTGTTAGGGGATGCATCCGTGTCCTTTGAGAAAAATTGTGTCEST: gi|60357469|gb|DN224442.1|DN224442
genomic: ATTTTGAACTGAATGTTTTTAAGCCAATGATCGCAGCCGGATTACTTCGAgtatgctttc ... ttttcaacagTCATTGAGGTTGTTAGGGGATGCATCCGTGTCCTTTGAGAAAAATTGTGTC
EST: ATTTTGAACTGAATGTTTTTAAGCCAATGATCGCAGCCGGATTACTTCGA TCATTGAGGTTGTTAGGGGATGCATCCGTGTCCTTTGAGAAAAATTGTGTCEST: gi|149089383|gb|EE178622.2|EE178622
genomic: ATTTTGAACTGAATGTTTTTAAGCCAATGATCGCAGCCGGATTACTTCGAgtatgctttc ... ttttcaacagTCATTGAGGTTGTTAGGGGATGCATCCGTGTCCTTTGAGAAAAATTGTGTC
EST: CAGCCGGATTACTTCGA TCATTGAGGTTGTTAGGGGATGCATCCGTGTCCTTTGAGAAAAATTGTGTCEST: gi|6022572|gb|AW067384.1|AW067384
genomic: CAGCCGGATTACTTCGAgtatgctttc ... ttttcaacagTCATTGAGGTTGTTAGGGGATGCATCCGTGTCCTTTGAGAAAAATTGTGTC
EST: ATTTTGAACTGAATGTTTTTAAGCCAATGATCGCAGCCGGATTACTTCGA TCATTGAGGTTGTTAGGGGATGCATCCGTGTCCTTTGAGAAAAATTGTGTCEST: gi|5901092|gb|AW042192.1|AW042192
genomic: ATTTTGAACTGAATGTTTTTAAGCCAATGATCGCAGCCGGATTACTTCGAgtatgctttc ... ttttcaacagTCATTGAGGTTGTTAGGGGATGCATCCGTGTCCTTTGAGAAAAATTGTGTC
EST: ATTTTGAACTGAATGTTTTTAAGCCAATGATCGCAGCCGGATTACTTCGA TCATTGAGGTTGTTAGGGGATGCATCCGTGTCCTTTGAGAAAAATTGTGTC
genomic: ATTTTGAACTGAATGTTTTTAAGCCAATGATCGCAGCCGGATTACTTCGAgtatgctttc ... ttttcaacagTCATTGAGGTTGTTAGGGGATGCATCCGTGTCCTTTGAGAAAAATTGTGTC
tttaacctcgtgatttttactgcaaatgtcttataacctttccctttttcaacagTCATTGAGGTTGTTAGGGGATGCATCCGTGTCCTTTGAGAAAAATTGTGTCAGGGGAATTCAAGCAAACCACAAGAGAATTTCACAACTTTTGCATGAG
ttataac putative branch site (score: 380)
tcttataacctttccc CT-rich tract
tgattttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctttctactatcatacttcaatacggttaatttactatagggactctttctagcctcataaccctcttgttgatttaggtacataatgttaatatatgagttggtaactttaacctcgtgatttttactgcaaatgtcttataacctttccctttttcaacagTCATTGAGGTTGTTAGGGGATGCATCCGTGTCCTTTGAGAAAAATTGTGTCAGGGGAATTCAAGCAAACCACAAGAGAATTTCACAACTTTTGCATGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA