1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgatttccatcctgcgaccgttagaacctttgctcattaaaccagaagctacttaaagagttatttgagctattttcttagcggctctgacatgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATTAGCAAGACAAAATTTGTAAAATGTGCTGTATCTGTCGTGCTGCTCAGC
species | Zea mays |
transcript | GRMZM5G860137_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGTTCAT GCAACCCTTTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|71426142|gb|DR807192.1|DR807192
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|21891396|gb|BQ744609.1|BQ744609
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGCGCGAGCAAATEST: gi|93281947|gb|EB674211.1|EB674211
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|211211417|gb|FL472067.1|FL472067
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|149110542|gb|EE294180.2|EE294180
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGTTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|60353947|gb|DN220920.1|DN220920
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|110951057|gb|EE171162.1|EE171162
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|110202377|gb|EC884274.1|EC884274
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|149107170|gb|EE189057.2|EE189057
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|78544790|gb|DV622288.1|DV622288
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGCGCGAGCAAATEST: gi|71437289|gb|DR818339.1|DR818339
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|89760641|gb|DY688973.1|DY688973
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|71298332|gb|DR785147.1|DR785147
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGCGCGAGCAAATEST: gi|91051494|gb|EB161912.1|EB161912
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGGGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGTTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|88748462|gb|DY532603.1|DY532603
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|71763804|gb|DR961741.1|DR961741
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|37375775|gb|CF624352.1|CF624352
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCTTATCCATTCATCATTGTGAAGTTGGCGCGAGCAAATEST: gi|78544465|gb|DV621963.1|DV621963
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGCGCGAGCAAATEST: gi|60353407|gb|DN220380.1|DN220380
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTTTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|211357448|gb|FL362295.1|FL362295
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCAGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|74232956|gb|DT640870.1|DT640870
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|6865254|gb|AW360604.1|AW360604
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGCGCGAGCAAATEST: gi|78078472|gb|DV506885.1|DV506885
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGTTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|50322371|gb|CO517497.1|CO517497
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|149029956|gb|EE154793.2|EE154793
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGTTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|149087111|gb|EE176650.2|EE176650
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATEST: gi|20337069|gb|BQ172699.1|BQ172699
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGCGCGAGCAAATEST: gi|113701695|gb|EE679199.1|EE679199
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGCGCGAGCAAATEST: gi|110939957|gb|EE160114.1|EE160114
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
EST: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCAT GCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
genomic: GGAGTTTGCAATGGCGGCGGCGGCGCTTCAGCCCTCGTTTTGGAGCTCATgtaagctctt ... catgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAAT
aagctacttaaagagttatttgagctattttcttagcggctctgacatgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATTAGCAAGACAAAATTTGTAAAATGTGCTGTATCTGTCGTGCTGCTCAGC
ctctgac putative branch site (score: 3)
ttaaagagttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgatttccatcctgcgaccgttagaacctttgctcattaaaccagaagctacttaaagagttatttgagctattttcttagcggctctgacatgatgcagGCAACCCTCTTCGCATATCCATTCATCATTGTGAAGTTGGTGCGAGCAAATTAGCAAGACAAAATTTGTAAAATGTGCTGTATCTGTCGTGCTGCTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT