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gtcattcttctatctggctccaagtttcctgctattgacagttttaaagatttcgtttgcactcacttcaattgattcaatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG
species | Zea mays |
transcript | GRMZM5G813909_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|18165861|gb|BM335700.1|BM335700
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|32935179|gb|CF039991.1|CF039991
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
EST: CATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|76293280|gb|DV032848.1|DV032848
genomic: CATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|32914225|gb|CF019037.1|CF019037
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
EST: ACCTTCTGAGCTTTTGTTTTTACCTTGTCAGCAGAGCGTTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|32914224|gb|CF019036.1|CF019036
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|71761327|gb|DR959264.1|DR959264
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|32806461|gb|CD958695.1|CD958695
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|32909800|gb|CF014612.1|CF014612
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|32791671|gb|CD943907.1|CD943907
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|32806368|gb|CD958602.1|CD958602
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|211004566|gb|FL452982.1|FL452982
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
EST: GAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|71767567|gb|DR965504.1|DR965504
genomic: GAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|78114997|gb|DV533385.1|DV533385
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|71758092|gb|DR956029.1|DR956029
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|6095666|gb|AW120333.1|AW120333
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCEST: gi|50322420|gb|CO517546.1|CO517546
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
EST: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAG GCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
genomic: ACCTTCTGAGCTTTTGCCTGAACCTTGTCAGCAGAGCATTTGAATTTCAGgtcattcttc ... caatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCC
tattgacagttttaaagatttcgtttgcactcacttcaattgattcaatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG
tttct CT-rich tract
agttttaaagattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcattcttctatctggctccaagtttcctgctattgacagttttaaagatttcgtttgcactcacttcaattgattcaatttctagGCTGATGCCTTTGCCAAGAACCTTGGATATGCCCCTCAGCTCCGAGCAGCCCTTGTTAAACTACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG