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...gccatccacaacctgagcttccccctctttacatgctatccaccacaaccagtcatgtttactgatccaggattctcttatctgatcttatgttaaacagCCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAAGTCATCCCTTCGCTTGGTAACCAG
species | Zea mays |
transcript | GRMZM5G801369_T03 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAG CCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAAEST: gi|4621622|gb|AI612455.1|AI612455
genomic: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAGgtatattcat ... tgttaaacagCCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAA
EST: GGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAG CCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAAEST: gi|32838018|gb|CD977696.1|CD977696
genomic: GGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAGgtatattcat ... tgttaaacagCCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAG CCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAAEST: gi|78120790|gb|DV539174.1|DV539174
genomic: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAGgtatattcat ... tgttaaacagCCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAG CCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAAEST: gi|32837052|gb|CD976730.1|CD976730
genomic: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAGgtatattcat ... tgttaaacagCCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAG CCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAAEST: gi|6021059|gb|AW065987.1|AW065987
genomic: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAGgtatattcat ... tgttaaacagCCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAG CCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGGTCATCAAEST: gi|6601788|gb|AW256229.1|AW256229
genomic: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAGgtatattcat ... tgttaaacagCCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAG CCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAAEST: gi|211502844|gb|FL437375.1|FL437375
genomic: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAGgtatattcat ... tgttaaacagCCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAG CCAGCCCATGAGAAAATTGGAGTGGTTGATTCCCAGTGGATTGTTCATCAAEST: gi|32917091|gb|CF021903.1|CF021903
genomic: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAGgtatattcat ... tgttaaacagCCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAG CCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAAEST: gi|50331568|gb|CO526694.1|CO526694
genomic: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAGgtatattcat ... tgttaaacagCCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAG CCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAAEST: gi|32839016|gb|CD978697.1|CD978697
genomic: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAGgtatattcat ... tgttaaacagCCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAG CCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAAEST: gi|32832999|gb|CD972677.1|CD972677
genomic: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAGgtatattcat ... tgttaaacagCCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAG CCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAAEST: gi|12973204|gb|BG268364.1|BG268364
genomic: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAGgtatattcat ... tgttaaacagCCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAA
EST: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAG CCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAA
genomic: ACTTGGTCCATGGATGGGGCCTTGATTTTGCTCTTAGGAAATGTGTGGAGgtatattcat ... tgttaaacagCCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAA
caaccagtcatgtttactgatccaggattctcttatctgatcttatgttaaacagCCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAAGTCATCCCTTCGCTTGGTAACCAG
ttatgttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccatccacaacctgagcttccccctctttacatgctatccaccacaaccagtcatgtttactgatccaggattctcttatctgatcttatgttaaacagCCAGCCCATGAGAAAATTGGAGTGGTTGACTCCCAGTGGATTGTTCATCAAGTCATCCCTTCGCTTGGTAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA