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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatctcacttattgacccgagtcaacacaaattctcttgctttacagcatatattcagtaaaatgctaagccactttttgcctcgttatttactgaatagATATGTGAGTGCGCTGTTTTGACTGATCGATTGGAAGTACTTAATCTATCTGGGAATCGCCTCACTGATGCATGCAGTTCTTACCTATTCACAATCCTGA

Basic information

species Zea mays
transcript GRMZM2G472023_T02
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G472023_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os02g54170.1 (Oryza sativa), 3'ss of exon 3
gatctcacttattgacccgagtcaacacaaattctcttgctttacagcatatattcagtaaaatgctaagccact-----ttttgcctcgttatttactga-atagATATGTGAGTGCGCTGTTTTGACTGATCGATTGGAAGTACTTAATCTATCTGGGAATCGCCTCACTGATGCATGCAGTTCTTACCTATTCACAATCCTGA
    ||  |   |    ||   ||| | ||  | |||||||||   ||| |  |||| |  |     |     ||       ||  ||| ||||||||||| | |||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||||||||  
----tcgttgccta--tcggaccaaaataagctgtcttgctttcaggcacacgttcattttaggaacagaattctgaaatcatttactccttatttactgatacagATATGTGAGTGCGCTGTTATGACTAATCGATTGGAAGTACTTAATCTGTCTGGGAATCGCCTCACAGATGCATGCGGTTCTTACCTTTTCACAATCCTAC

upper sequence: GRMZM2G472023_T02 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os02g54280.1 (Oryza sativa), 3'ss of exon 13
gatctcacttattgacccgagtcaacacaaattctcttgctttacagcatatattcagtaaaatgctaagccact-----ttttgcctcgttatttactga-atagATATGTGAGTGCGCTGTTTTGACTGATCGATTGGAAGTACTTAATCTATCTGGGAATCGCCTCACTGATGCATGCAGTTCTTACCTATTCACAATCCTGA
    |||||   |    |    ||| | ||  | |||||||||   ||| || |||| |  |     |     ||       ||  ||| ||||||||| | | ||||||||||||| |||||| ||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||||| |||||||||| |||||| ||||  
----tcactgccta--tcagaccaaaataagctgtcttgctttcaggcacatgttcattttaggaacagaattctgaaatcatttgctccttatttactaatacagATATGTGAGTGTGCTGTTATGACTAATCGATTAGAAGTACTTAATCTGTCTGGGAATCGCCTCACAGATGCATGCGGTTCTTACCTTTTCACAGTCCTAC

upper sequence: GRMZM2G472023_T02 (Zea mays), 3'ss of exon 12
lower sequence: Vv04s0044g00860.t01 (Vitis vinifera), 3'ss of exon 13
---gatctcacttattgacccgagtcaacacaaattctcttgctttacagcatatattcagtaaaatgctaagccactttttgcctcgttatttactgaatagATATGTGAGTGCGCTGTTTTGACTGATCGATTGGAAGTACTTAATCTATCTGGGAATCGCCTCACTGATGCATGCAGTTCTTACCTATTCACAATCCTGA
   | | | | ||||||     | |||  |   |      |   | |  | | ||      | || ||   |   ||   ||   |   ||| |  |    |||| ||||| ||| ||||  |   || |||||||||||| |||||| | |||||||| || ||||||||||||||  | |||||||| |  || ||| || 
agtgctttta-ttattgtatttactcattattgacataacta--taattggaaatgccttttcaagtgactaaatacaggtttattacatatatgatctccagATTTGTGAATGCCCTGTGCTATTTGCTCGATTGGAAGTGCTTAATATCTCTGGGAACCGTCTCACTGATGCATGTGGATCTTACCTTTCAACTATCTTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcatatattcagtaaaatgctaagccactttttgcctcgttatttactgaatagATATGTGAGTGCGCTGTTTTGACTGATCGATTGGAAGTACTTAATCTATCTGGGAATCGCCTCACTGATGCATGCAGTTCTTACCTATTCACAATCCTGA
     atattcagtaaaat  TA-rich tract