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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttactagatatttcagccatatagaaaccagtgaaggacacatgctgagaagttaagatacattatttcatcattgaaaacagtgaatttctgtttgcagGTCACCGCAGAATCTTTCATTGATGGAGGATTCTTCAAGACAGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC

Basic information

species Zea mays
transcript GRMZM2G460078_T03
intron # 12
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G460078_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os01g55590.1 (Oryza sativa), 3'ss of exon 12
ttactaga-tatttcagccatatagaaaccag-tgaaggacacatgctgagaagttaagatacattatttcatcattgaaaacagtgaatttctgtttgcagGTCACCGCAGAATCTTTCATTGATGGAGGATTCTTCAAGACAGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC
|||  ||| | |   | |||   || |||||  ||||||   |||| ||||||   ||  | | || |||| |  || |  ||||| ||||| | || |||||| || |||||||| || |||||||| || ||||||||||| |||||||||||||||||||| || |||||||| ||||||||||| || |
ttagcagaatttgctaaccactaaggaaccaaatgaagggtgcatgttgagaatcaaatgt-ctttgtttcgttgttcagcacagttaatttgtatt-gcagGTTACTGCAGAATCATTTATTGATGGTGGGTTCTTCAAGACTGGTGATACAGTAACTGTAGACGATGAAGGATATTTCATAATTTTAGGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgagaagttaagatacattatttcatcattgaaaacagtgaatttctgtttgcagGTCACCGCAGAATCTTTCATTGATGGAGGATTCTTCAAGACAGGTGATACAGTAACTGTAGATGAGGAAGGATACTTCATAATTTTGGGAC
                                          tttctgttt  CT-rich tract
       ttaagatacattattt  TA-rich tract