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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtagggcatctcttttttgtaatcatgatattaactctactgaaggtggctaatgaactataatgttgtagAGCTCTGCAATAGTACCTGTTGTTCTGGTCCTGGTGGGCACTAAACCTGACCTTCCGAGGGTTATAAGGGAATTGTGCTATCCAAAGTGGGCTCTAGAAG

Basic information

species Zea mays
transcript GRMZM2G430675_T03
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32923118|gb|CF027930.1|CF027930
EST:     GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTG                         AGCTCTGCAATAGTA
genomic: GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTGgtaagtaggg ... aatgttgtagAGCTCTGCAATAGTA
EST: gi|32921859|gb|CF026671.1|CF026671
EST:     GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTG                         AGCTCTGCAATAGT
genomic: GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTGgtaagtaggg ... aatgttgtagAGCTCTGCAATAGT
EST: gi|32920474|gb|CF025286.1|CF025286
EST:     GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTG                         AGCTCTGCAATAGTA
genomic: GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTGgtaagtaggg ... aatgttgtagAGCTCTGCAATAGTA
EST: gi|32922329|gb|CF027141.1|CF027141
EST:     GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTG                         AGCTCTGCAATAGTA
genomic: GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTGgtaagtaggg ... aatgttgtagAGCTCTGCAATAGTA
EST: gi|32922314|gb|CF027126.1|CF027126
EST:     GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTG                         AGCTCTGCAATAGTA
genomic: GCATAGGTTACTCTTTTGCTATTTGGTTTGAGCTCGGATTAGCACAGTTGgtaagtaggg ... aatgttgtagAGCTCTGCAATAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtaatcatgatattaactctactgaaggtggctaatgaactataatgttgtagAGCTCTGCAATAGTACCTGTTGTTCTGGTCCTGGTGGGCACTAAACCTGACCTTCCGAGGGTTATAAGGGAATTGTGCTATCCAAAGTGGGCTCTAGAAG
                                  taatgaactataat  TA-rich tract