1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtatgaatgcatattttgcttctaccactaactcctttgacatcatcttttactattcaatcctaatatcttcccttttgctctctgcagAAAGTGTATCATAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA
species | Zea mays |
transcript | GRMZM2G391936_T03 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTTGCAGAAGGAAAAGTTCCTATTGGGATTGGAGAGAATACAACGATTCA AAAGTGTATCATAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCEST: gi|13236975|gb|BG354989.1|BG354989
genomic: CTTGCAGAAGGAAAAGTTCCTATTGGGATTGGAGAGAATACAACGATTCAgtatgaatgc ... ctctctgcagAAAGTGTATCATAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTC
EST: CTTGCAGAAGGAAAAGTTCCTATTGGGATTGGAGAGAATGCAACGATTCA AAAGTGTATCATAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCEST: gi|13126504|gb|BG317074.1|BG317074
genomic: CTTGCAGAAGGAAAAGTTCCTATTGGGATTGGAGAGAATACAACGATTCAgtatgaatgc ... ctctctgcagAAAGTGTATCATAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTC
EST: CTTGCAGAAGGAAAAGTTCCTATTGGGATTGGAGAGAATACGACGATTCA AAAGTGTATCATAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCEST: gi|16378153|gb|BI992295.1|BI992295
genomic: CTTGCAGAAGGAAAAGTTCCTATTGGGATTGGAGAGAATACAACGATTCAgtatgaatgc ... ctctctgcagAAAGTGTATCATAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTC
EST: CTTGCAGAAGGAAAAGTTCCTATTGGGATTGGAGAGAATACAACGATTCC AAAGTGTATCATAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTC
genomic: CTTGCAGAAGGAAAAGTTCCTATTGGGATTGGAGAGAATACAACGATTCAgtatgaatgc ... ctctctgcagAAAGTGTATCATAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTC
tttgacatcatcttttactattcaatcctaatatcttcccttttgctctctgcagAAAGTGTATCATAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA
tcctaat putative branch site (score: 29)
tatcttcccttttgct CT-rich tract
ttttactattcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaatgcatattttgcttctaccactaactcctttgacatcatcttttactattcaatcctaatatcttcccttttgctctctgcagAAAGTGTATCATAGACAAGAATGCGAGGATAGGGAAGAAAGTGGTAATCTCCAACTCTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA