1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtcaggtttgatttcttgtttgagagaataaaattgacctgtaatgtcccatctgatatataatttgcttttgtagGTTGTGCGCTCATCTACAGTCATGTCAGCATCGGGTCTTAGTTTGCTAGCTGGAACTACAATACCACCTAAAAGA
species | Zea mays |
transcript | GRMZM2G147587_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTTTACCCCCGGCTTTGGAACCAGAGTCTCCTAGAATTGAGGCACCTAAG GTTGTGCGCTCATCTACAATCATGTCAGCATCGGGGCTTAGTTTGCTAGCTEST: gi|32931362|gb|CF036174.1|CF036174
genomic: CTTTACCCCTGGCTTTGGAACCGGAGTCTCCTAGAATTGAGGCACCTAAGgtcaggtttg ... gcttttgtagGTTGTGCGCTCATCTACAGTCATGTCAGCATCGGGTCTTAGTTTGCTAGCT
EST: CTTTACCCCCGGCTTTGGAACCAGAGTCTCCTAGAATTGAGGCACCTAAG GTTGTGCGCTCATCTACAATCATGTCAGCATCGGGGCTTAGTTTGCTAGCTEST: gi|32943634|gb|CF048453.1|CF048453
genomic: CTTTACCCCTGGCTTTGGAACCGGAGTCTCCTAGAATTGAGGCACCTAAGgtcaggtttg ... gcttttgtagGTTGTGCGCTCATCTACAGTCATGTCAGCATCGGGTCTTAGTTTGCTAGCT
EST: CTTTACCCCCGGCCTTGGAACCAGAGTCTCCTAGAATTGAGGCACCTAAG GTTGTGCGCTCATCTACAATCATGTCAGCATCGGGGCTTAGTTTGCTAGCTEST: gi|32932373|gb|CF037185.1|CF037185
genomic: CTTTACCCCTGGCTTTGGAACCGGAGTCTCCTAGAATTGAGGCACCTAAGgtcaggtttg ... gcttttgtagGTTGTGCGCTCATCTACAGTCATGTCAGCATCGGGTCTTAGTTTGCTAGCT
EST: CTTTACCCCCGGCTTTGGAACCAGAGTCTCCTAGAATTGAGGCACCTAAG GTTGTGCGCTCATCTACAATCATGTCAGCATCGGGGCTTAGTTTGCTAGCT
genomic: CTTTACCCCTGGCTTTGGAACCGGAGTCTCCTAGAATTGAGGCACCTAAGgtcaggtttg ... gcttttgtagGTTGTGCGCTCATCTACAGTCATGTCAGCATCGGGTCTTAGTTTGCTAGCT
gagagaataaaattgacctgtaatgtcccatctgatatataatttgcttttgtagGTTGTGCGCTCATCTACAGTCATGTCAGCATCGGGTCTTAGTTTGCTAGCTGGAACTACAATACCACCTAAAAGA
tttgctttt CT-rich tract
atatataatttgcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaggtttgatttcttgtttgagagaataaaattgacctgtaatgtcccatctgatatataatttgcttttgtagGTTGTGCGCTCATCTACAGTCATGTCAGCATCGGGTCTTAGTTTGCTAGCTGGAACTACAATACCACCTAAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA