Sequence
atgc intronic sequence ATGC exonic sequencegttaggcagctgctactagtaccgttttgttttgaacgggctgtggaagatatccatagactaatgctgccatatgaaaatttacagATAGTAGTGTCGCTTGGAGCAGGTCCATGGGACGCTCTGTATGGAGGAGGGAATACCCCGGCGTTCGTCTTGGCTTCGGTCTTCTCCCTGGCAGCAGGTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G145107_T01 (Zea mays), 3'ss of exon 13
lower sequence: LOC_Os02g58080.1 (Oryza sativa), 3'ss of exon 13
gttaggcagctgctactag-taccgttttgttttgaacgggctgtg---gaagatatccatagactaatgctgccatatgaaaatttacagATAGTAGTGTCGCTTGGAGCAGGTCCATGGGACGCTCTGTATGGAGGAGGGAATACCCCGGCGTTCGTCTTGGCTTCGGTCTTCTCCCTGGCAGCAGGTG
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gttagcatgttcataagaaacaaaatgtatttctatatgtgctgtcactgaagatgtct-tgaccatttaatactccattattctgtgcagATAGTAGTGTCACTAGGAGCAGGTCCATGGGATGCTCTCTTTGGGGGAGGGAACGTCCCTGCTTTCGCCTTGGCTTCCGTTTTCTCACTAGGAGCTGGTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|211075868|gb|FL012538.1|FL012538EST: GTTTGGCCACAGGAGTCCTAAATCTTGCTATCGTGGTTCCCCAG ATAGTAGTGTCGCTTGGAGCAGGTCCATGGGACGCTCTGTATGGAGGAGGG
genomic: GTTTGGCCACAGGAGTCCTAAATCTTGCTATCGTGGTTCCCCAGgttaggcagc ... aaatttacagATAGTAGTGTCGCTTGGAGCAGGTCCATGGGACGCTCTGTATGGAGGAGGG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgaacgggctgtggaagatatccatagactaatgctgccatatgaaaatttacagATAGTAGTGTCGCTTGGAGCAGGTCCATGGGACGCTCTGTATGGAGGAGGGAATACCCCGGCGTTCGTCTTGGCTTCGGTCTTCTCCCTGGCAGCAGGTG
gactaat putative branch site (score: 2)
atatgaaaatttaca TA-rich tract