Sequence
atgc intronic sequence ATGC exonic sequencegtatatccgcatcaaataaatttctagattgtactgacctgttatttctaatggaacatatattggtttgttccttttttgtcttcagAAATCTGGACTTAGAGACCTTACAACAAGTAAGACACCAGAGGCATCTATATCTGCGGCATTGTCGAGAGACACTAAGCTTTTTGAAAGAACGGCACCTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G125294_T01 (Zea mays), 3'ss of exon 12
lower sequence: LOC_Os05g48820.1 (Oryza sativa), 3'ss of exon 12
gtatatc---cgcatcaaataaatttctagattgtactgacctgttatttctaatggaacatatattggtttgttccttttttgtcttcagAAATCTGGACTTAGAGACCTTACAACAAGTAAGACACCAGAGGCATCTATATCTGCGGCATTGTCGAGAGACACTAAGCTTTTTGAAAGAACGGCACCTT
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gtatgccgaccacatccaaaaaagttc--aattgta---acctgttgctatct----------tattgattttgtttattgatctcttcagAAATCTGGACTGAGAGACCTTACAACAAGCAAGACACCTGAGGCATCTATATCTGCTGCACTGTCAAGGGATTCAAAGCTTTTCGAAAGGACTGCACCTT
upper sequence: GRMZM2G125294_T01 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA06G44290.1 (Glycine max), 3'ss of exon 14
gtatatccgcatcaaataaatttctagattgtactgacctgttatttctaatggaacatatattggtttgttccttttttgtcttcagAAATCTGGACTTAGAGACCTTACAACAAGTAAGACACCAGAGGCATCTATATCTGCGGCATTGTCGAGAGACACTAAGCTTTTTGAAAGAACGGCACCTT
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gtataactat-tctactggatgtcttattcataatctcatgttaat-------gattaaattttcttcatttttttttgtttatctagAAATCTGGACTTCGTGATCTTACAACAAGCAAAACACCAGAGGCTTCTATTTCTGCTGCTTTGTCTAGGGATACAAAACTATTTGAAAGGACAGCTCCTT
upper sequence: GRMZM2G125294_T01 (Zea mays), 3'ss of exon 12
lower sequence: AT1G28420.1 (Arabidopsis thaliana), 3'ss of exon 12
gtatatccgcatcaaataaatttctagattgtactgacc-tgttatttctaatggaacatatattggtttgttccttttttgtcttcagAAATCTGGACTTAGAGACCTTACAACAAGTAAGACACCAGAGGCATCTATATCTGCGGCATTGTCGAGAGACACTAAGCTTTTTGAAAGAACGGCACCTT
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gtaaatctataatctatat-ttgctatgctgttttcatcgtatttgaatttttttcatttacat-agtctttatgttttccattgaaagAAATCTGGACTTCGGGACTTGACCACAAGCAAGACACCAGAGGCTTCTATTTCTGTTGCATTGACAAGAGATGTGAAACTCTTTGAAAGAATAGCTCCTT
upper sequence: GRMZM2G125294_T01 (Zea mays), 3'ss of exon 12
lower sequence: Vv12s0028g03090.t01 (Vitis vinifera), 3'ss of exon 9
gtatatccgcatcaaataaatttctagattgtactgacctgttatttctaatggaacatat---attggtttgttccttttttgtcttcagAAATCTGGACTTAGAGACCTTACAACAAGTAAGACACCAGAGGCATCTATATCTGCGGCATTGTCGAGAGACACTAAGCTTTTTGAAAGAACGGCACCTT
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-----------------gtattgata-attgtg-taacct-ttgcatctaatgcagcctcttaaactcatttggtttatattttatgtaagAAATCTGGACTTCGGGACCTTACAACAAGCAAGACACCAGAGGCATCTATTGCTGCTGCCCTGTCAAGGGATGGAAAGCTTTTTGAAAGGACTGCACCAT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgacctgttatttctaatggaacatatattggtttgttccttttttgtcttcagAAATCTGGACTTAGAGACCTTACAACAAGTAAGACACCAGAGGCATCTATATCTGCGGCATTGTCGAGAGACACTAAGCTTTTTGAAAGAACGGCACCTT
tttgttccttttttgt CT-rich tract
ttatttctaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatatccgcatcaaataaatttctagattgtactgacctgttatttctaatggaacatatattggtttgttccttttttgtcttcagAAATCTGGACTTAGAGACCTTACAACAAGTAAGACACCAGAGGCATCTATATCTGCGGCATTGTCGAGAGACACTAAGCTTTTTGAAAGAACGGCACCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC