1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtcagtgctagatctctcttctttttttttcattcttctgccattgtgtccctctggaaacctgaaagagctaagttgctggtattttccgttagGTAATCATATGGTGGGCTGGTCTCATGAGAGGAGCAGTGTCAATTGCGCTTGCCTATAACAAG
species | Zea mays |
transcript | GRMZM2G063492_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CCAACCTAAGCAAAAAGGAGGCCCGTCCAAAGATCTCCTTCAAGCAACAA GTAATCATATGGTGGGCTGGTCTCATGAGAGGAGCAGTGTCAATTGCGCTTEST: gi|37397420|gb|CF636007.1|CF636007
genomic: CCAACCTAAGCAAAAAGGAGGCCCGTCCAAAGATCTCCTTCAAGCAACAAgtcagtgcta ... tttccgttagGTAATCATATGGTGGGCTGGTCTCATGAGAGGAGCAGTGTCAATTGCGCTT
EST: CCAACCTAAGCAAAAAGGAGGCCCGTCCAAAGATCTCCTTCAAGCAACAA GTAATCATATGGTGGGCTGGTCTCATGAGAGGAGCAGTGTCAATTGCGCTTEST: gi|71311178|gb|DR791899.1|DR791899
genomic: CCAACCTAAGCAAAAAGGAGGCCCGTCCAAAGATCTCCTTCAAGCAACAAgtcagtgcta ... tttccgttagGTAATCATATGGTGGGCTGGTCTCATGAGAGGAGCAGTGTCAATTGCGCTT
EST: CCAACCTAAGCAAAAAGGAGGCCCGTCCAAAGATCTCCTTCAAGCAACAA GTAATCATATGGTGGGCTGGTCTCATGAGAGGAGCAGTGTCAATTGCGCTTEST: gi|89106454|gb|DY576671.1|DY576671
genomic: CCAACCTAAGCAAAAAGGAGGCCCGTCCAAAGATCTCCTTCAAGCAACAAgtcagtgcta ... tttccgttagGTAATCATATGGTGGGCTGGTCTCATGAGAGGAGCAGTGTCAATTGCGCTT
EST: CCAACCTAAGCAAAAAGGAGGCCCGTCCAAAGATCTCCTTCAAGCAACAA GTAATCATATGGTGGGCTGGTCTCATGAGAGGAGCAGTGTCAATTGCGCTTEST: gi|18963602|gb|BM660527.1|BM660527
genomic: CCAACCTAAGCAAAAAGGAGGCCCGTCCAAAGATCTCCTTCAAGCAACAAgtcagtgcta ... tttccgttagGTAATCATATGGTGGGCTGGTCTCATGAGAGGAGCAGTGTCAATTGCGCTT
EST: CCAACCTAAGCAAAAAGGAGGCCCGTCCAAAGATCTCCTTCAAGCAACAA GTAATCATATGGTGGGCTGGTCTCATGAGAGGAGCAGTGTCAATTGCGCTTEST: gi|91872697|gb|EB402654.1|EB402654
genomic: CCAACCTAAGCAAAAAGGAGGCCCGTCCAAAGATCTCCTTCAAGCAACAAgtcagtgcta ... tttccgttagGTAATCATATGGTGGGCTGGTCTCATGAGAGGAGCAGTGTCAATTGCGCTT
EST: GTCCAAAGATCTCCTTCAAGCAACAA GTAATCATATGGTGGGCTGGTCTCATGAGAGGAGCAGTGTCAATTGCGCTT
genomic: GTCCAAAGATCTCCTTCAAGCAACAAgtcagtgcta ... tttccgttagGTAATCATATGGTGGGCTGGTCTCATGAGAGGAGCAGTGTCAATTGCGCTT
ccattgtgtccctctggaaacctgaaagagctaagttgctggtattttccgttagGTAATCATATGGTGGGCTGGTCTCATGAGAGGAGCAGTGTCAATTGCGCTTGCCTATAACAAG
ttttccgtt CT-rich tract
tatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgctagatctctcttctttttttttcattcttctgccattgtgtccctctggaaacctgaaagagctaagttgctggtattttccgttagGTAATCATATGGTGGGCTGGTCTCATGAGAGGAGCAGTGTCAATTGCGCTTGCCTATAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG