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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...actttgatctgtaatgcacattacactaagtattaacggataatatcatattctcttagttgttaatctttgtactagtttaatcatttatactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT

Basic information

species Zea mays
transcript GRMZM2G044011_T01
intron # 12
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67018038|gb|CO446787.1|CO446787
EST:     AGCAGCACAGGAG                         GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
genomic: AGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: gi|211495349|gb|FL234479.1|FL234479
EST:     ATACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG                         GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: gi|91048656|gb|EB159074.1|EB159074
EST:     ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG                         GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: gi|67018605|gb|CO447354.1|CO447354
EST:     ATACACCAGGTGTGATGGCACTAATAAAAGATACAAAAGCAGCACAGGAG                         GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: gi|67024357|gb|CO453106.1|CO453106
EST:     ATACACCAGGTGTGATGGCACTAATAAAAGATACAAAAGCAGCACAGGAG                         GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: gi|40303701|gb|CK348088.1|CK348088
EST:     ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG                         GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: gi|71763506|gb|DR961443.1|DR961443
EST:     ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG                         GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: gi|74236267|gb|DT644181.1|DT644181
EST:     GCACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG                         GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: gi|211359052|gb|FL430699.1|FL430699
EST:     ATACACCAGGTGTGATGGCACTGATAAAAGATACAAAASCAGCACAGGAG                         GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: gi|71442136|gb|DR823186.1|DR823186
EST:     ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG                         GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: gi|50333168|gb|CO528294.1|CO528294
EST:     ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG                         GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: gi|67021632|gb|CO450381.1|CO450381
EST:     ATACACCAGGTGTGATGGCACTAATAAAAGATACAAAAGCAGCACAGGAG                         GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: gi|71302744|gb|DR787484.1|DR787484
EST:     ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG                         GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
EST: gi|76016282|gb|DT943452.1|DT943452
EST:     ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAG                         GTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
genomic: ACACACCAGGTGTGATGGCACTGATAAAAGATACAAAAGCAGCACAGGAGgtaagactga ... tactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcatattctcttagttgttaatctttgtactagtttaatcatttatactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT
                              tagtttaatcatttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
actttgatctgtaatgcacattacactaagtattaacggataatatcatattctcttagttgttaatctttgtactagtttaatcatttatactttgcagGTCCGAGCTCTGCAGGATTTCTTCAATATGCTTACTAAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG