1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaattttttattcatgatttgattttcaatattgactacaatgttatggacccttatatagcaacccttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCT
species | Zea mays |
transcript | GRMZM2G017089_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|148951459|gb|EC897184.2|EC897184
genomic: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: AAAGTCTGTTCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|37376961|gb|CF625047.1|CF625047
genomic: AAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: TCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|116814103|gb|EC856623.1|EC856623
genomic: TCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAGGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|71432304|gb|DR813354.1|DR813354
genomic: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|31406178|gb|CD484910.1|CD484910
genomic: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: AAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|32933315|gb|CF038127.1|CF038127
genomic: AAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|60357310|gb|DN224283.1|DN224283
genomic: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|93012802|gb|EB638322.1|EB638322
genomic: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|110491423|gb|EE013510.1|EE013510
genomic: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: CTTACTCCCCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|6538870|gb|AW225009.1|AW225009
genomic: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: TCATCCAAAGGA GAAAGC-TTTGCATCAGCATCAGCAGNCAACGTAAAGAAGTTTAACCTTCCEST: gi|71757914|gb|DR955851.1|DR955851
genomic: TCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|33093989|gb|CF053983.1|CF053983
genomic: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: AGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|211016045|gb|FL237689.1|FL237689
genomic: AGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|148950912|gb|EC896542.2|EC896542
genomic: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|37382890|gb|CF628417.1|CF628417
genomic: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: AAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCA-TTGCTATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCEST: gi|148943610|gb|EC888673.2|EC888673
genomic: AAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGC-ATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTC
EST: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|71432303|gb|DR813353.1|DR813353
genomic: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|33091634|gb|CF051628.1|CF051628
genomic: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCEST: gi|31909551|gb|CD650975.1|CD650975
genomic: CTTACTCACCATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
EST: CATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGA GAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
genomic: CATAAAAAGTCTGTCCGAGCTATGGCGCTTCATCCAAAGGAgtaatttttt ... cttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCC
attttcaatattgactacaatgttatggacccttatatagcaacccttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCT
tattgac putative branch site (score: 79)
cccttttttc putative PPT
ttatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaattttttattcatgatttgattttcaatattgactacaatgttatggacccttatatagcaacccttttttcagGAAAGCATTTGCATCAGCATCAGCAGACAACGTAAAGAAGTTTAACCTTCCCAAAGGCGAATTTCTGCACAACATGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT