1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...cattctatttcttctgcattatttactctagcatatgcatctgactatatctgaattttaataatttcaaataactgtcatttggttgatggcattgcagGTTATGGGTAATCATGTTGGTGTTACAATTGGTGGTGCCAATGGGCATTTTGAACTGAATGTTTTTAAGCCAATGATCGCAGCCGGATTACTTCGA
species | Zea mays |
transcript | GRMZM2G010823_T01 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: GGAAAGTTAATCCAACCCAGTGTGAGGCTCTGACAATGGTTTGTGCACAG GTTATGGGTAATCATGTTGGTGTTACAATTGGTGGTGCCAATGGGCATTTTEST: gi|6022572|gb|AW067384.1|AW067384
genomic: GGAAAGTTAATCCAACCCAGTGTGAGGCTCTGACAATGGTTTGTGCACAGgtacaaaatt ... ggcattgcagGTTATGGGTAATCATGTTGGTGTTACAATTGGTGGTGCCAATGGGCATTTT
EST: AACCCAGTGTGAGGCTCTGACAATGGTTTGTGCCCAG GTTATGGGTAATCATGTTGGTGTTACAATTGGTGGTGCCAATGGGCATTTTEST: gi|5901092|gb|AW042192.1|AW042192
genomic: AACCCAGTGTGAGGCTCTGACAATGGTTTGTGCACAGgtacaaaatt ... ggcattgcagGTTATGGGTAATCATGTTGGTGTTACAATTGGTGGTGCCAATGGGCATTTT
EST: GGAAAGTTAATCCAACCCAGTGTGAGGCTCTGACAATGGTTTGTGCACAG GTTATGGGTAATCATGTTGGTGTTACAATTGGTGGTGCCAATGGGCATTTT
genomic: GGAAAGTTAATCCAACCCAGTGTGAGGCTCTGACAATGGTTTGTGCACAGgtacaaaatt ... ggcattgcagGTTATGGGTAATCATGTTGGTGTTACAATTGGTGGTGCCAATGGGCATTTT
tatatctgaattttaataatttcaaataactgtcatttggttgatggcattgcagGTTATGGGTAATCATGTTGGTGTTACAATTGGTGGTGCCAATGGGCATTTTGAACTGAATGTTTTTAAGCCAATGATCGCAGCCGGATTACTTCGA
aattttaataatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cattctatttcttctgcattatttactctagcatatgcatctgactatatctgaattttaataatttcaaataactgtcatttggttgatggcattgcagGTTATGGGTAATCATGTTGGTGTTACAATTGGTGGTGCCAATGGGCATTTTGAACTGAATGTTTTTAAGCCAATGATCGCAGCCGGATTACTTCGA
- - - - - cttctgc
- - - - - - - - - - - - - - - - - - gcatctg
- - - - - - - - - - - - - - - - - - - - - - - - -tctgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttggttg