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gtgaggatcgttatcactttttttatcttgagtggttcccccttctttaagcagtttatcttttgtcattgtaaccaatgtctaccttttctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTTGGGGAAATGTTCCATGAGAGGCAATTAGGGCAAAACTGAGAGTTAGCGT
species | Zea mays |
transcript | GRMZM5G825110_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAG ATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTTEST: gi|32809742|gb|CD961976.1|CD961976
genomic: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGgtgaggatcg ... tctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTT
EST: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAG ATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTTEST: gi|78079229|gb|DV507641.1|DV507641
genomic: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGgtgaggatcg ... tctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTT
EST: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAG ATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTTEST: gi|71760475|gb|DR958412.1|DR958412
genomic: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGgtgaggatcg ... tctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTT
EST: AGTCATTCATTGCACCTCAGAACTTTTCTGTTGAGATAATCTTGGATCAG ATTTTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTTEST: gi|71426533|gb|DR807583.1|DR807583
genomic: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGgtgaggatcg ... tctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTT
EST: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAG ATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTTEST: gi|78121240|gb|DV539624.1|DV539624
genomic: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGgtgaggatcg ... tctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTT
EST: AGTCATTCATTGCACCTCAGAACTTTTCTGTTGAGATAATCTTGGATCAG ATTTTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTTEST: gi|71426082|gb|DR807132.1|DR807132
genomic: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGgtgaggatcg ... tctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTT
EST: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAG ATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTTEST: gi|60338336|gb|DN205309.1|DN205309
genomic: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGgtgaggatcg ... tctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTT
EST: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAG ATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTTEST: gi|60344634|gb|DN211607.1|DN211607
genomic: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGgtgaggatcg ... tctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTT
EST: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAG ATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTTEST: gi|76014866|gb|DT942036.1|DT942036
genomic: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGgtgaggatcg ... tctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTT
EST: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAG ATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTTEST: gi|113702720|gb|EE680224.1|EE680224
genomic: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGgtgaggatcg ... tctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTT
EST: GCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAG ATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTTEST: gi|76021500|gb|DT948670.1|DT948670
genomic: GCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGgtgaggatcg ... tctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTT
EST: AGTCATTCATTGCACCTCAGAACTTTTCTGTTGAGATAATCTTGGATCAG ATTTTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTTEST: gi|76287485|gb|DV027053.1|DV027053
genomic: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGgtgaggatcg ... tctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTT
EST: AGTCATTCATTGCACCTCAGAACTTTTCTGTTGAGATAATCTTGGATCAG ATTTTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTTEST: gi|7135092|gb|AW497912.1|AW497912
genomic: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGgtgaggatcg ... tctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTT
EST: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAG ATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTT
genomic: AGTCATTCATTGCACCTCAGAACTTCTCTGTTGAGATAATCTTGGATCAGgtgaggatcg ... tctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTT
ctttaagcagtttatcttttgtcattgtaaccaatgtctaccttttctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTTGGGGAAATGTTCCATGAGAGGCAATTAGGGCAAAACTGAGAGTTAGCGT
ttgtaac putative branch site (score: 109)
tctaccttttctcatt putative PPT
tttatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggatcgttatcactttttttatcttgagtggttcccccttctttaagcagtttatcttttgtcattgtaaccaatgtctaccttttctcattcagATTCTAAGAAACCTGACCTATGAGGAGCAAAAATACCTATATGAACAACTTGGGGAAATGTTCCATGAGAGGCAATTAGGGCAAAACTGAGAGTTAGCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG