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gtaaggaactccaaagatctatttcaaagttttggttccctccttaggattgctggaagaaaaaggagaaagactgtttacttagccttttcttgctgctgattttttttctgttttcatttcattattgtttttttgtgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAACTCCAAAGATCTATTTCAAAGTTTTGGCTTCGAGGATCAGCCAATAATAACTGGAC
species | Zea mays |
transcript | GRMZM2G702159_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTA CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAACTCCAAAEST: gi|91875691|gb|EB405648.1|EB405648
genomic: CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAgtaaggaact ... ttgtgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAACTCCAAA
EST: CTGCTTATGTTTCTTCAATTGGGAGGATATACTCTA CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAACTCCAAAEST: gi|33285753|gb|CF075548.1|CF075548
genomic: CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAgtaaggaact ... ttgtgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAACTCCAAA
EST: CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTA CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAACTCCAAAEST: gi|28188199|gb|CB179809.1|CB179809
genomic: CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAgtaaggaact ... ttgtgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAACTCCAAA
EST: CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTA CTGCTTATGTTTCTTNAATTTGGAGGATATACTCTAGTAAGGAACTCCCAAEST: gi|33770597|gb|CF272891.1|CF272891
genomic: CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAgtaaggaact ... ttgtgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAACTCC-AA
EST: CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTA CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAACTCCAAA
genomic: CTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAgtaaggaact ... ttgtgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAACTCCAAA
tcttgctgctgattttttttctgttttcatttcattattgtttttttgtgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAACTCCAAAGATCTATTTCAAAGTTTTGGCTTCGAGGATCAGCCAATAATAACTGGAC
tgctgat putative branch site (score: 3)
ttttttttctgttttc CT-rich tract
attttttttctgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaactccaaagatctatttcaaagttttggttccctccttaggattgctggaagaaaaaggagaaagactgtttacttagccttttcttgctgctgattttttttctgttttcatttcattattgtttttttgtgtgcagCTGCTTATGTTTCTTCAATTTGGAGGATATACTCTAGTAAGGAACTCCAAAGATCTATTTCAAAGTTTTGGCTTCGAGGATCAGCCAATAATAACTGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT