1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atgtttttcttttggatggataatctattgattgacccatcatgtaacaaatacagccttctcaattcatgttaccagctactctatcttctatgcgcagTCAAACTTTTGTTGACGTCCTCCAACAAGCTGGTGCTCAAGCAAGGTTACTATTGTACGAAGGGAAAACACATACAGATATCTTTGTACAG
species | Zea mays |
transcript | GRMZM2G473976_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: GTTGTTCTTATGCATGGAACTGAAGATTATTCAATACCATCATCTTCCAG TCAAACTTTTGTTGACGTCCTCCAACAAGCTGGTGCTGAAGCAAGGTTACTEST: gi|78082250|gb|DV510662.1|DV510662
genomic: GTTGTTCTTATGCATGGAACTGAAGATTATTCAATACCATCATCTTCCAGgtttgttcat ... ctatgcgcagTCAAACTTTTGTTGACGTCCTCCAACAAGCTGGTGCTCAAGCAAGGTTACT
EST: GTTGTTTTTATGCATGGAACTGAAGATTATTCAATACCATCATCTTCCAG TCAAACTTTTGTTGACGTCCTCCAACAAGCTGGTGCTCAAGCAAGGTTACTEST: gi|86466387|gb|DY232758.1|DY232758
genomic: GTTGTTCTTATGCATGGAACTGAAGATTATTCAATACCATCATCTTCCAGgtttgttcat ... ctatgcgcagTCAAACTTTTGTTGACGTCCTCCAACAAGCTGGTGCTCAAGCAAGGTTACT
EST: GTTGTTCTTATGCATGGAACTGAAGATTATTCAATACCATCATCTTCCAG TCAAACTTTTGTTGACGTCCTCCAACAAGCTGGTGCTCAAGCAAGGTTACTEST: gi|32928596|gb|CF033408.1|CF033408
genomic: GTTGTTCTTATGCATGGAACTGAAGATTATTCAATACCATCATCTTCCAGgtttgttcat ... ctatgcgcagTCAAACTTTTGTTGACGTCCTCCAACAAGCTGGTGCTCAAGCAAGGTTACT
EST: GTTGTTCTTATGCATGGAACTGAAGATTATTCAATACCATCATCTTCCAG TCAAACTTTTGTTGACGTCCTCCAACAAGCTGGTGCTGAAGCAAGGTTACTEST: gi|5296149|gb|AI783024.1|AI783024
genomic: GTTGTTCTTATGCATGGAACTGAAGATTATTCAATACCATCATCTTCCAGgtttgttcat ... ctatgcgcagTCAAACTTTTGTTGACGTCCTCCAACAAGCTGGTGCTCAAGCAAGGTTACT
EST: GTTGTTCTTATGCATGGAACTGAAGATTATTCAATACCATCATCTTCCAG TCAAACTTTTGTTGACGTCCTCCAACAAGCTGGTGCTGAAGCAAGGTTACT
genomic: GTTGTTCTTATGCATGGAACTGAAGATTATTCAATACCATCATCTTCCAGgtttgttcat ... ctatgcgcagTCAAACTTTTGTTGACGTCCTCCAACAAGCTGGTGCTCAAGCAAGGTTACT
aacaaatacagccttctcaattcatgttaccagctactctatcttctatgcgcagTCAAACTTTTGTTGACGTCCTCCAACAAGCTGGTGCTCAAGCAAGGTTACTATTGTACGAAGGGAAAACACATACAGATATCTTTGTACAG
atgtaac putative branch site (score: 52)
ctactctatcttct putative PPT
aattcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtttttcttttggatggataatctattgattgacccatcatgtaacaaatacagccttctcaattcatgttaccagctactctatcttctatgcgcagTCAAACTTTTGTTGACGTCCTCCAACAAGCTGGTGCTCAAGCAAGGTTACTATTGTACGAAGGGAAAACACATACAGATATCTTTGTACAG
-tgttttt
- - - - - - tggatgg
- - - - - - - - - - - - - -ttgattg
- - - - - - - - - - - - - - - - - -cccatca
- - - - - - - - - - - - - - - - - - - - - - taacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taccagc