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...tcccttttccagtctattgattgtaattacaatgtaatttttgtcccctgtaagatatgttacagtaacattttagctaatcccaatttgcttattgcagCACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGCAATATTGGAGGGAGAGAGAATCTGGCATGAGCTCTCTAGCTTACTTTCT
species | Zea mays |
transcript | GRMZM2G430675_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: AGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGCTT CACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGCEST: gi|32921859|gb|CF026671.1|CF026671
genomic: AGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTTgtaagtcagc ... cttattgcagCACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGC
EST: AGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTT CACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGCEST: gi|32920474|gb|CF025286.1|CF025286
genomic: AGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTTgtaagtcagc ... cttattgcagCACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGC
EST: AGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTT CACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGCEST: gi|32922314|gb|CF027126.1|CF027126
genomic: AGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTTgtaagtcagc ... cttattgcagCACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGC
EST: AGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTT CACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGC
genomic: AGATGATTCATTCGGTGTAGCTTCTTATGGATATACCATAATGGCAGTTTgtaagtcagc ... cttattgcagCACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGC
ccctgtaagatatgttacagtaacattttagctaatcccaatttgcttattgcagCACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGCAATATTGGAGGGAGAGAGAATCTGGCATGAGCTCTCTAGCTTACTTTCT
tttgctt CT-rich tract
taacatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcccttttccagtctattgattgtaattacaatgtaatttttgtcccctgtaagatatgttacagtaacattttagctaatcccaatttgcttattgcagCACTGCTATGCCAGCTTGCGTCATTGCGGTCATTTTCACCTGAAAAATTGCAATATTGGAGGGAGAGAGAATCTGGCATGAGCTCTCTAGCTTACTTTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG