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...agcaagtagaaacacgagatatttttttttttgcaagtgacttatcccatgcctgaacattttagttctctgtgcttcacaattgttaacaatctttcagGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTACTTCAGCAGAGGGCGATAATTTCACTTATCGGAAATGTGGAGCAATCGT
species | Zea mays |
transcript | GRMZM2G300862_T02 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CTGTGTCACTTGATCCATCAAAGATCTGGAGTAGGGAACTGATACAGCAG GAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTAEST: gi|89249156|gb|DY620942.1|DY620942
genomic: CTGTGTCACTTGATCCATCAAAGATCTGGAGTAGGGAACTGATACAGCAGgcaagtgttt ... aatctttcagGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTA
EST: GGAACTGATACAGCAG GAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTAEST: gi|32807954|gb|CD960188.1|CD960188
genomic: GGAACTGATACAGCAGgcaagtgttt ... aatctttcagGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTA
EST: GATCTGGAGTAGGGAACTGATACAGCAG GAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTAEST: gi|76911222|gb|DV164206.1|DV164206
genomic: GATCTGGAGTAGGGAACTGATACAGCAGgcaagtgttt ... aatctttcagGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTA
EST: CTGTGTCACTTGATCCATCAAAGATCTGGAGTAGGGAACTGATACAGCAG GAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTTTA
genomic: CTGTGTCACTTGATCCATCAAAGATCTGGAGTAGGGAACTGATACAGCAGgcaagtgttt ... aatctttcagGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTA
cccatgcctgaacattttagttctctgtgcttcacaattgttaacaatctttcagGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTACTTCAGCAGAGGGCGATAATTTCACTTATCGGAAATGTGGAGCAATCGT
tgttaac putative branch site (score: 2)
tctttc putative PPT
aacatttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcaagtagaaacacgagatatttttttttttgcaagtgacttatcccatgcctgaacattttagttctctgtgcttcacaattgttaacaatctttcagGAACTTGACCATGTAGTTGAAGAGCTTGAGAAAATAGCAATTGTTCGTCTACTTCAGCAGAGGGCGATAATTTCACTTATCGGAAATGTGGAGCAATCGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA