1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtacattttcttttgctagaatcttctgttgatccaccatggtgtagaacgtactgctatcttaatgtgatttagctgatgtctcgattcgtcttttgtgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGGGAGTACTGGCAAAGGTCAACAATTGTCTTGGTGCTCTCTCGCAGCAAGC
species | Zea mays |
transcript | GRMZM2G147450_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGGEST: gi|21626214|gb|BQ621135.1|BQ621135
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG CCTTCGGTGAGTTTATAGAACTCATGAAGAGCAACAGATTGTGAGGGAGGGEST: gi|148969715|gb|EE020587.2|EE020587
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTTTTCCCCAGGTCCGCATGATTCCGACACAG CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGGEST: gi|6021531|gb|AW066459.1|AW066459
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGGEST: gi|211486296|gb|FL444470.1|FL444470
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG C-TTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGGEST: gi|37392466|gb|CF633484.1|CF633484
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGG-AGGGEST: gi|20802593|gb|BQ293643.1|BQ293643
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG CCTTCGGTGAGTTTATAGAGCTCATGAAGAACAACAGATTGTGAGGGAGGGEST: gi|148934461|gb|EC878500.2|EC878500
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGGEST: gi|45846984|gb|CN070927.1|CN070927
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGA-GGAGGGEST: gi|21759933|gb|BQ635474.1|BQ635474
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACCCAG CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGGEST: gi|12973319|gb|BG268421.1|BG268421
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG CCTTCGGTGAGTATATAGAGCTCATGAAGAGCEST: gi|20208474|gb|BQ134563.1|BQ134563
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGC
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGGEST: gi|5670854|gb|AI932117.1|AI932117
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGGEST: gi|211122171|gb|FL463027.1|FL463027
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTCTTCTCCAGGTCCGCATGATTCCGACACAG C-TTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGGEST: gi|213169758|gb|FM183377.1|FM183377
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGG-AGGGEST: gi|149102853|gb|EE288195.2|EE288195
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGGEST: gi|21759841|gb|BQ635382.1|BQ635382
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG AATACGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGGEST: gi|74245055|gb|DT652969.1|DT652969
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGGEST: gi|78544147|gb|DV621645.1|DV621645
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
ctgctatcttaatgtgatttagctgatgtctcgattcgtcttttgtgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGGGAGTACTGGCAAAGGTCAACAATTGTCTTGGTGCTCTCTCGCAGCAAGC
tcttttgt CT-rich tract
atcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacattttcttttgctagaatcttctgttgatccaccatggtgtagaacgtactgctatcttaatgtgatttagctgatgtctcgattcgtcttttgtgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGGGAGTACTGGCAAAGGTCAACAATTGTCTTGGTGCTCTCTCGCAGCAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG