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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaactctgctatcctctggttggttaccctccttaacatatatggcaagtggctcactgtggggtgatttcctttttttcttcttttgaaccttgcctctcgtcgacatctgaccgacattgatcaagATTTTTTTTAGTACCGAGTGACGAAGAGTTGATATGGAGCTGACGATCATTTGAATTGATTTCGTTGTGCAAGACTTGTATTACATAAACATTTAAATAC

Basic information

species Zea mays
transcript GRMZM2G143462_T04
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60338543|gb|DN205516.1|DN205516
EST:     CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG                         ANNNNNNNNAGTACCGAGTGACGAAGAGTTGATATGGAGCTGACGATCATT
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... attgatcaagATTTTTTTTAGTACCGAGTGACGAAGAGTTGATATGGAGCTGACGATCATT
EST: gi|71764240|gb|DR962177.1|DR962177
EST:     CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG                         ANNNNNNNNAGTACCGAGTGACGAAGAGTTGATATGGAGCTGACGATCATT
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... attgatcaagATTTTTTTTAGTACCGAGTGACGAAGAGTTGATATGGAGCTGACGATCATT
EST: gi|71771538|gb|DR969475.1|DR969475
EST:     CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG                         ANNNNNNNNAGTACCGAGTGACGAAGAGTTGATATGGAGCTGACGATCATT
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... attgatcaagATTTTTTTTAGTACCGAGTGACGAAGAGTTGATATGGAGCTGACGATCATT
EST: gi|78111155|gb|DV529552.1|DV529552
EST:     CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACG                         ANNNNNNNNAGTACCGAGTGACGAAGAGTTGATATGGAGCTGACGATCATT
genomic: CTCCTTGAGCATGCTGGTGAGGAAGATTAAGCGGGAGTAGTTTTCATACGgtgagaactc ... attgatcaagATTTTTTTTAGTACCGAGTGACGAAGAGTTGATATGGAGCTGACGATCATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttcttcttttgaaccttgcctctcgtcgacatctgaccgacattgatcaagATTTTTTTTAGTACCGAGTGACGAAGAGTTGATATGGAGCTGACGATCATTTGAATTGATTTCGTTGTGCAAGACTTGTATTACATAAACATTTAAATAC
       ttctttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagaactctgctatcctctggttggttaccctccttaacatatatggcaagtggctcactgtggggtgatttcctttttttcttcttttgaaccttgcctctcgtcgacatctgaccgacattgatcaagATTTTTTTTAGTACCGAGTGACGAAGAGTTGATATGGAGCTGACGATCATTTGAATTGATTTCGTTGTGCAAGACTTGTATTACATAAACATTTAAATAC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA