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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atttagagtttgaattgtggtcatcaatgttattacttattctgttattgactaagactgaaattccagtgtgaaggatgacatttttggttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAATAAGGGAGGCAGTGGGGTTGTTCAGGCTCCTGAAATCTGTAGAATGAAG

Basic information

species Zea mays
transcript GRMZM2G133757_T01
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G133757_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os11g13694.1 (Oryza sativa), 3'ss of exon 11
atttagagtttgaattgtggtcatcaatgttattacttattctgttattgactaagactgaaattccagt---gtgaaggatgacatttttggttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAATAAGGGAGGCAGTGGGGTTGTTCAGGCTCCTGAAATCTGTAGAATGAAG
   | |  | || | ||       |  |||  | | | ||  ||| |       | | |||| | ||  |    |    | ||||  || ||  | | ||||||||||||||||||||||||||| || || || ||||| || || || |||||||| || || |  || |||||||||||  | |||||  |||| |||||
-catggcttgtggaatgcacgaggcc-tgtcttgattaatagtgtaacatttatacattgaagtcccttttacatttttgttgactgttctgtattt-tgcagTGCAAGATCTCTTCATCGAGGTACAGGCGTTCTGCATTGCGTTTTCCCGAATAAGAGAAGCGGCTGGTTTGTTCAGGCTTTTAAAATCGTTAGAGTGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211180687|gb|FK970894.1|FK970894
EST:     TGTCTTTCTACAGAGCCTCATTCGGAACAGGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCBTTCTCGCGAA
genomic: TGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|101395522|gb|EB819689.1|EB819689
EST:     ACTAGTATGTGTCTTTTTACAGAGCCTCATTCGGAACAAGATAATAGATG                         TGCAAGATCTCTTCTTCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|74240368|gb|DT648282.1|DT648282
EST:     ATTAGTATGTGTCTTTTTACAGAGCCTCATTCGGAACAAGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|71761219|gb|DR959156.1|DR959156
EST:     GATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: GATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|33095887|gb|CF055881.1|CF055881
EST:     ACTAGTATGTGTCTTTCTACAGAGCCCCATTCGGAACAAGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|74237045|gb|DT644959.1|DT644959
EST:     ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|76289048|gb|DV028616.1|DV028616
EST:     ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAGGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|60339490|gb|DN206463.1|DN206463
EST:     ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|71443366|gb|DR824416.1|DR824416
EST:     ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATG                         TGCAAGATCTTTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|211180688|gb|FK970895.1|FK970895
EST:     TGTCTTTCTACAGAGCCTCATTCGGAACAGGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: TGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|60401226|gb|DN234033.1|DN234033
EST:     ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: ACTAGTATGTGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
EST: gi|211180689|gb|FK970896.1|FK970896
EST:     TGTCTTTCTACAGAGCCTCATTCGGAACAGGATAATAGATG                         TGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA
genomic: TGTCTTTCTACAGAGCCTCATTCGGAACAAGATAATAGATGgtgagtgtat ... ttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tattgactaagactgaaattccagtgtgaaggatgacatttttggttgtgtgcagTGCAAGATCTCTTCATCGAGGTGCAAGCATTTTGCATCGCCTTCTCGCGAATAAGGGAGGCAGTGGGGTTGTTCAGGCTCCTGAAATCTGTAGAATGAAG
 tattgac  putative branch site (score: 2)
                                   acattttt  TA-rich tract